Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12657613	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13157843	0.92[AFR][1000 genomes]
rs13157850	0.92[AFR][1000 genomes]
rs13158653	0.88[ASN][1000 genomes]
rs13158797	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13170987	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13184546	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1371383	0.96[AFR][1000 genomes]
rs1530448	0.88[ASN][1000 genomes]
rs1530449	0.88[ASN][1000 genomes]
rs17462237	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099702	0.87[ASN][1000 genomes]
rs34481463	0.92[ASN][1000 genomes]
rs34743230	0.88[ASN][1000 genomes]
rs35066093	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4640788	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4836172	0.88[ASN][1000 genomes]
rs71586056	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71586057	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7701670	0.89[ASN][1000 genomes]
rs7729384	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7735092	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3361600	chr5:124626989-124628140	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	nsv823206	chr5:124627008-124628142	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124614400-124631400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124622400-124628600	Weak transcription	Fetal Brain Male	brain
3	chr5:124627400-124628800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:124627600-124628600	Weak transcription	Fetal Brain Female	brain
5	chr5:124627600-124629200	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:124627800-124633800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:124628000-124629800	Enhancers	Dnd41	blood

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