Variant report

Variant	rs7729384
Chromosome Location	chr5:124632654-124632655
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10037035	0.84[ASN][1000 genomes]
rs10039759	0.82[ASN][1000 genomes]
rs10044610	0.82[ASN][1000 genomes]
rs11740072	0.81[ASN][1000 genomes]
rs12657613	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13157843	0.88[AFR][1000 genomes]
rs13157850	0.88[AFR][1000 genomes]
rs13158653	0.91[ASN][1000 genomes]
rs13158797	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13170987	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13184546	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1371383	0.92[AFR][1000 genomes]
rs1530448	0.91[ASN][1000 genomes]
rs1530449	0.91[ASN][1000 genomes]
rs17462237	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17523152	0.82[ASN][1000 genomes]
rs2099702	0.89[ASN][1000 genomes]
rs34061745	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34481463	0.92[ASN][1000 genomes]
rs34743230	0.91[ASN][1000 genomes]
rs35066093	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4537060	0.83[ASN][1000 genomes]
rs4640788	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4836172	0.91[ASN][1000 genomes]
rs71586056	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71586057	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73782307	0.82[ASN][1000 genomes]
rs73782308	0.82[ASN][1000 genomes]
rs7701670	0.92[ASN][1000 genomes]
rs7714653	0.81[ASN][1000 genomes]
rs7735092	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124627800-124633800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:124629000-124634000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:124629600-124634000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:124630400-124634600	Weak transcription	Fetal Brain Male	brain
5	chr5:124630800-124633800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:124630800-124637200	Weak transcription	Fetal Brain Female	brain
7	chr5:124631400-124633200	Enhancers	Spleen	Spleen
8	chr5:124631400-124639400	Weak transcription	Fetal Kidney	kidney
9	chr5:124631600-124633400	Weak transcription	Fetal Heart	heart
10	chr5:124631600-124633800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:124631600-124634000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:124631600-124634000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:124631600-124634000	Weak transcription	HSMM	muscle
14	chr5:124631800-124633400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr5:124631800-124633600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:124631800-124633800	Weak transcription	HMEC	breast
17	chr5:124631800-124634000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:124631800-124634600	Weak transcription	NHDF-Ad	bronchial
19	chr5:124632000-124633800	Weak transcription	NHEK	skin
20	chr5:124632200-124633200	Enhancers	Right Atrium	heart
21	chr5:124632400-124633400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:124632600-124634200	Weak transcription	Psoas Muscle	Psoas

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