Variant report

Variant	rs4836172
Chromosome Location	chr5:124638138-124638139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11740072	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11954232	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11954294	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12657613	0.83[ASN][1000 genomes]
rs13158653	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13158797	0.95[ASN][1000 genomes]
rs13170987	0.94[ASN][1000 genomes]
rs13184546	0.81[ASN][1000 genomes]
rs13189249	0.81[ASN][1000 genomes]
rs13189771	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1530448	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1530449	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17462237	0.88[ASN][1000 genomes]
rs2099702	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34061745	0.88[ASN][1000 genomes]
rs34481463	0.95[ASN][1000 genomes]
rs34743230	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35066093	0.83[ASN][1000 genomes]
rs4640788	0.83[ASN][1000 genomes]
rs62373337	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71586056	0.97[ASN][1000 genomes]
rs71586057	0.83[ASN][1000 genomes]
rs7701670	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727788	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7729384	0.91[ASN][1000 genomes]
rs7735092	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124631400-124639400	Weak transcription	Fetal Kidney	kidney
2	chr5:124634400-124639400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:124634400-124646200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:124634600-124638600	Weak transcription	Psoas Muscle	Psoas
5	chr5:124635000-124646800	Weak transcription	HSMMtube	muscle
6	chr5:124635200-124648000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:124637000-124638800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:124637200-124638200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:124637400-124638200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:124637400-124638200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:124637400-124638600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:124637600-124638200	Enhancers	Brain Germinal Matrix	brain
13	chr5:124637600-124638200	Enhancers	Brain Substantia Nigra	brain
14	chr5:124637800-124640400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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