Variant report

Variant	rs71586057
Chromosome Location	chr5:124646831-124646832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10037035	0.95[ASN][1000 genomes]
rs10039759	0.90[ASN][1000 genomes]
rs10044610	0.90[ASN][1000 genomes]
rs11740072	0.94[ASN][1000 genomes]
rs11954232	0.99[ASN][1000 genomes]
rs11954294	0.97[ASN][1000 genomes]
rs12657613	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13157843	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13157850	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13158653	0.83[ASN][1000 genomes]
rs13158797	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13170987	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13184546	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13189249	0.97[ASN][1000 genomes]
rs13189771	0.97[ASN][1000 genomes]
rs13354270	0.86[ASN][1000 genomes]
rs13360309	0.88[ASN][1000 genomes]
rs1371383	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1530448	0.83[ASN][1000 genomes]
rs1530449	0.83[ASN][1000 genomes]
rs17462237	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17463846	0.86[ASN][1000 genomes]
rs17523152	0.90[ASN][1000 genomes]
rs2099702	0.85[ASN][1000 genomes]
rs34061745	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34481463	0.82[ASN][1000 genomes]
rs34743230	0.83[ASN][1000 genomes]
rs35066093	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311589	0.95[ASN][1000 genomes]
rs4537060	0.91[ASN][1000 genomes]
rs4640788	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4836172	0.83[ASN][1000 genomes]
rs62373337	0.99[ASN][1000 genomes]
rs71586056	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73782307	0.90[ASN][1000 genomes]
rs73782308	0.90[ASN][1000 genomes]
rs7701670	0.82[ASN][1000 genomes]
rs7714653	0.89[ASN][1000 genomes]
rs7727788	0.99[ASN][1000 genomes]
rs7729384	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7735092	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124635200-124648000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124644000-124647000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:124645800-124648200	Enhancers	HUVEC	blood vessel
4	chr5:124646200-124647600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:124646200-124647800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:124646200-124648200	Enhancers	NHEK	skin
7	chr5:124646200-124648400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:124646200-124648400	Enhancers	HMEC	breast
9	chr5:124646200-124648400	Enhancers	HSMM	muscle
10	chr5:124646200-124648600	Enhancers	NHDF-Ad	bronchial
11	chr5:124646600-124647400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:124646600-124647400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr5:124646600-124647600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:124646600-124648200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:124646600-124648200	Enhancers	NH-A	brain
16	chr5:124646600-124648400	Enhancers	Osteobl	bone
17	chr5:124646800-124647600	Enhancers	HSMMtube	muscle
18	chr5:124646800-124648600	Enhancers	NHLF	lung

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