Variant report

Variant	rs34117151
Chromosome Location	chr15:73097221-73097222
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73075592..73077961-chr15:73095620..73098045,2	MCF-7	breast:
2	chr15:73095643..73098434-chr15:73099404..73102029,2	K562	blood:
3	chr15:73088223..73090036-chr15:73095674..73097846,2	K562	blood:
4	chr15:73074471..73077912-chr15:73094314..73098768,4	MCF-7	breast:
5	chr15:73090912..73092510-chr15:73095226..73098076,2	K562	blood:
6	chr15:73095998..73099016-chr15:73347374..73350745,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260898	Chromatin interaction
ENSG00000159322	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10459647	0.82[ASN][1000 genomes]
rs11631214	0.85[ASN][1000 genomes]
rs11631352	0.94[ASN][1000 genomes]
rs11637168	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12900863	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12911743	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2162269	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2304597	0.85[ASN][1000 genomes]
rs28582982	0.87[ASN][1000 genomes]
rs3850986	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3959716	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4776613	0.93[ASN][1000 genomes]
rs4776614	0.93[ASN][1000 genomes]
rs4777532	0.84[ASN][1000 genomes]
rs4777534	0.86[ASN][1000 genomes]
rs4777536	0.86[ASN][1000 genomes]
rs4777542	0.93[ASN][1000 genomes]
rs4777546	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4777548	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62017600	0.87[ASN][1000 genomes]
rs7164727	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7166595	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7171728	0.86[ASN][1000 genomes]
rs7176223	0.92[ASN][1000 genomes]
rs8024986	0.81[ASN][1000 genomes]
rs8025333	0.81[ASN][1000 genomes]
rs8027181	0.94[ASN][1000 genomes]
rs8030477	0.94[ASN][1000 genomes]
rs8033073	0.86[ASN][1000 genomes]
rs8038247	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs890354	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9460	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73097000-73097400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr15:73097200-73097400	Flanking Bivalent TSS/Enh	K562	blood
3	chr15:73097200-73097600	Bivalent/Poised TSS	HepG2	liver
4	chr15:73097200-73098200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:73097200-73098600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr15:73097200-73098600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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