Variant report

Variant	rs4777536
Chromosome Location	chr15:73056329-73056330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73054668..73057321-chr17:56707852..56709605,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10459647	0.96[ASN][1000 genomes]
rs11072385	0.90[ASN][1000 genomes]
rs11631214	0.95[ASN][1000 genomes]
rs11631352	0.91[ASN][1000 genomes]
rs11637168	0.84[ASN][1000 genomes]
rs12900863	0.86[ASN][1000 genomes]
rs12911743	0.81[ASN][1000 genomes]
rs2162269	0.90[ASN][1000 genomes]
rs2277598	0.93[ASN][1000 genomes]
rs2304597	0.99[ASN][1000 genomes]
rs28582982	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34117151	0.86[ASN][1000 genomes]
rs3850986	0.90[ASN][1000 genomes]
rs4776613	0.93[ASN][1000 genomes]
rs4776614	0.93[ASN][1000 genomes]
rs4777532	0.98[ASN][1000 genomes]
rs4777534	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777542	0.93[ASN][1000 genomes]
rs4777546	0.81[ASN][1000 genomes]
rs62017600	0.98[ASN][1000 genomes]
rs7164727	0.86[ASN][1000 genomes]
rs7166595	0.86[ASN][1000 genomes]
rs7171728	0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176223	0.94[ASN][1000 genomes]
rs8024986	0.95[ASN][1000 genomes]
rs8025333	0.95[ASN][1000 genomes]
rs8027181	0.91[ASN][1000 genomes]
rs8030477	0.91[ASN][1000 genomes]
rs8033073	1.00[ASN][1000 genomes]
rs8038247	0.86[ASN][1000 genomes]
rs890354	0.84[ASN][1000 genomes]
rs9460	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73030600-73058400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:73041800-73071000	Strong transcription	Liver	Liver
3	chr15:73042200-73058600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:73042200-73058600	Strong transcription	A549	lung
5	chr15:73043400-73056600	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:73043400-73056600	Strong transcription	Fetal Muscle Trunk	muscle
7	chr15:73043400-73056800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr15:73043400-73058800	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:73043400-73058800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:73043400-73059000	Strong transcription	Fetal Intestine Small	intestine
11	chr15:73043400-73059000	Strong transcription	Left Ventricle	heart
12	chr15:73043400-73059200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:73043400-73059200	Strong transcription	Fetal Intestine Large	intestine
14	chr15:73043800-73057000	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:73043800-73057200	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:73043800-73073600	Strong transcription	Fetal Thymus	thymus
17	chr15:73044000-73057400	Strong transcription	Dnd41	blood
18	chr15:73044000-73058600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:73044200-73059200	Strong transcription	Primary T cells from cord blood	blood
20	chr15:73044200-73067600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr15:73044400-73056400	Weak transcription	Fetal Heart	heart
22	chr15:73044400-73056400	Strong transcription	Hela-S3	cervix
23	chr15:73045000-73074200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:73045200-73058800	Strong transcription	Primary B cells from peripheral blood	blood
25	chr15:73045200-73074200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:73045400-73059800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:73045400-73060800	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr15:73045400-73066400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:73045600-73067400	Strong transcription	Placenta	Placenta
30	chr15:73045800-73059200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:73046200-73059200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:73046600-73056600	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr15:73046600-73058800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr15:73046600-73059200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:73046800-73059000	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:73046800-73060600	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr15:73046800-73067600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:73048600-73075200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:73049000-73059800	Weak transcription	Colon Smooth Muscle	Colon
40	chr15:73049000-73063800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr15:73049200-73059000	Weak transcription	Stomach Mucosa	stomach
42	chr15:73049200-73059800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr15:73049400-73058200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr15:73050400-73058400	Weak transcription	Colonic Mucosa	Colon
45	chr15:73050400-73059200	Strong transcription	Duodenum Mucosa	Duodenum
46	chr15:73050400-73060600	Weak transcription	Gastric	stomach
47	chr15:73051000-73059600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:73051200-73056800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:73051200-73057600	Strong transcription	Primary hematopoietic stem cells	blood
50	chr15:73051200-73058600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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