Variant report

Variant	rs4777542
Chromosome Location	chr15:73082366-73082367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73070867..73073438-chr15:73080121..73082937,2	K562	blood:
2	chr15:73080133..73082607-chr15:73083509..73085215,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10459647	0.89[ASN][1000 genomes]
rs11072385	0.83[ASN][1000 genomes]
rs11631214	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11631352	0.90[CEU][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637168	0.91[ASN][1000 genomes]
rs12900863	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12911743	0.88[ASN][1000 genomes]
rs2162269	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2277598	0.86[ASN][1000 genomes]
rs2304597	0.80[CEU][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28582982	0.94[ASN][1000 genomes]
rs34117151	0.93[ASN][1000 genomes]
rs3850986	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3959716	0.85[ASN][1000 genomes]
rs4776613	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776614	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777532	0.91[ASN][1000 genomes]
rs4777534	0.93[ASN][1000 genomes]
rs4777536	0.93[ASN][1000 genomes]
rs4777546	0.88[ASN][1000 genomes]
rs4777548	0.86[ASN][1000 genomes]
rs62017600	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7164727	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7166595	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7167076	0.80[CEU][hapmap]
rs7171728	0.93[ASN][1000 genomes]
rs7176223	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8024986	0.88[ASN][1000 genomes]
rs8025333	0.88[ASN][1000 genomes]
rs8027181	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030477	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8033073	0.80[CEU][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8038247	0.93[ASN][1000 genomes]
rs890354	0.91[ASN][1000 genomes]
rs9460	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Urate levels	23263486	GWAS catalog

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73077000-73088800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:73078600-73082400	Weak transcription	NH-A	brain
3	chr15:73079000-73082400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:73079600-73082600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:73080000-73082600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:73080000-73088800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:73081200-73088800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:73082000-73083600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:73082000-73083600	Enhancers	NHDF-Ad	bronchial
10	chr15:73082200-73083400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:73082200-73083400	Enhancers	Osteobl	bone
12	chr15:73082200-73083600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:73082200-73088800	Weak transcription	Ovary	ovary

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