Variant report

Variant	rs8027181
Chromosome Location	chr15:73088869-73088870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73087611..73089762-chr15:73093247..73096231,2	MCF-7	breast:
2	chr15:73074665..73076706-chr15:73087969..73090842,2	MCF-7	breast:
3	chr15:73087557..73089460-chr15:73373408..73375516,2	MCF-7	breast:
4	chr15:73088420..73089395-chr15:73370490..73371104,2	MCF-7	breast:
5	chr15:73088811..73089611-chr15:73374330..73375082,2	MCF-7	breast:
6	chr15:73088223..73090036-chr15:73095674..73097846,2	K562	blood:
7	chr15:73076344..73077195-chr15:73088645..73089718,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159322	Chromatin interaction
ENSG00000260898	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10459647	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11072385	0.85[ASN][1000 genomes]
rs11631214	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11631352	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637168	0.93[ASN][1000 genomes]
rs12900863	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12911743	0.90[ASN][1000 genomes]
rs2162269	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2277598	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2304597	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28582982	0.93[ASN][1000 genomes]
rs34117151	0.94[ASN][1000 genomes]
rs3850986	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3959716	0.86[ASN][1000 genomes]
rs4776613	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4776614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4777532	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4777534	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4777536	0.91[ASN][1000 genomes]
rs4777542	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4777546	0.90[ASN][1000 genomes]
rs4777548	0.87[ASN][1000 genomes]
rs62017600	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7164727	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7166595	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7167076	0.80[CEU][hapmap]
rs7171728	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7176223	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7176235	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs7178130	0.92[JPT][hapmap]
rs8024986	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8025333	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8030477	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033073	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8033580	0.93[JPT][hapmap]
rs8038247	0.94[ASN][1000 genomes]
rs890354	0.93[ASN][1000 genomes]
rs9460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73083400-73089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:73086800-73089000	Weak transcription	Right Atrium	heart
3	chr15:73088400-73089600	Bivalent/Poised TSS	K562	blood
4	chr15:73088400-73090000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr15:73088600-73089600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:73088600-73089600	Active TSS	A549	lung
7	chr15:73088600-73090000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr15:73088800-73089000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:73088800-73089000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:73088800-73089000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:73088800-73089000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:73088800-73089000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:73088800-73089000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:73088800-73089000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr15:73088800-73089000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr15:73088800-73089000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:73088800-73089000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr15:73088800-73089000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:73088800-73089000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
20	chr15:73088800-73089000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:73088800-73089000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:73088800-73089000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:73088800-73089000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
24	chr15:73088800-73089000	Enhancers	Esophagus	oesophagus
25	chr15:73088800-73089000	Bivalent Enhancer	Fetal Stomach	stomach
26	chr15:73088800-73089000	Enhancers	Gastric	stomach
27	chr15:73088800-73089000	Bivalent Enhancer	Left Ventricle	heart
28	chr15:73088800-73089000	Enhancers	Lung	lung
29	chr15:73088800-73089000	Bivalent/Poised TSS	Thymus	Thymus
30	chr15:73088800-73089000	Enhancers	Spleen	Spleen
31	chr15:73088800-73089000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
32	chr15:73088800-73089000	Flanking Bivalent TSS/Enh	NHEK	skin
33	chr15:73088800-73089200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
34	chr15:73088800-73089200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:73088800-73089200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
36	chr15:73088800-73089200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
37	chr15:73088800-73089200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:73088800-73089200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr15:73088800-73089200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:73088800-73089200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
41	chr15:73088800-73089200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:73088800-73089200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
43	chr15:73088800-73089200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
44	chr15:73088800-73089200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr15:73088800-73089200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
46	chr15:73088800-73089200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:73088800-73089200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
48	chr15:73088800-73089200	Flanking Active TSS	Aorta	Aorta
49	chr15:73088800-73089200	Flanking Active TSS	Brain Cingulate Gyrus	brain
50	chr15:73088800-73089200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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