Variant report

Variant	rs34129956
Chromosome Location	chr7:150909301-150909302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150900947..150904902-chr7:150906819..150911270,6	MCF-7	breast:
2	chr7:150888866..150891539-chr7:150907679..150909956,2	K562	blood:
3	chr7:150908780..150913504-chr7:150916695..150920010,4	MCF-7	breast:
4	chr7:150756323..150758655-chr7:150909019..150911809,2	K562	blood:
5	chr7:150905577..150911406-chr7:150912646..150916801,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183016	Chromatin interaction
ENSG00000033050	Chromatin interaction
ENSG00000164889	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1065071	1.00[ASN][1000 genomes]
rs12113924	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12531871	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12532489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12536244	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12538823	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227935	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13239059	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13239247	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1563636	1.00[ASN][1000 genomes]
rs34163999	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34770061	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34821030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35041510	0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35093688	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35292078	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35302282	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35746260	0.90[AMR][1000 genomes]
rs35833042	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748098	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3800794	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55968735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66608097	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67128841	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6967282	0.83[ASN][1000 genomes]
rs7784344	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7786151	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150885000-150910000	Weak transcription	Right Atrium	heart
2	chr7:150899000-150909600	Weak transcription	Aorta	Aorta
3	chr7:150901800-150910000	Weak transcription	Ovary	ovary
4	chr7:150902000-150910200	Weak transcription	Right Ventricle	heart
5	chr7:150902000-150910400	Weak transcription	Pancreas	Pancrea
6	chr7:150903200-150909600	Weak transcription	Spleen	Spleen
7	chr7:150904400-150909600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:150904600-150909600	Weak transcription	Psoas Muscle	Psoas
9	chr7:150904600-150909600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:150904800-150909400	Weak transcription	Fetal Thymus	thymus
11	chr7:150905000-150910000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:150905000-150910000	Weak transcription	Esophagus	oesophagus
13	chr7:150905000-150910800	Weak transcription	Colonic Mucosa	Colon
14	chr7:150905200-150909600	Weak transcription	Gastric	stomach
15	chr7:150905200-150910000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:150905200-150910200	Weak transcription	A549	lung
17	chr7:150905400-150909400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:150905400-150909600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:150905400-150912000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:150905400-150912000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr7:150905600-150910000	Weak transcription	Brain Germinal Matrix	brain
22	chr7:150905600-150910000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:150905600-150911600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr7:150905800-150909800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:150905800-150909800	Weak transcription	HMEC	breast
26	chr7:150905800-150910200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr7:150905800-150910200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr7:150905800-150910200	Weak transcription	HepG2	liver
29	chr7:150905800-150910800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:150906000-150909400	Weak transcription	Fetal Brain Female	brain
31	chr7:150906000-150909600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr7:150906000-150909600	Weak transcription	NHLF	lung
33	chr7:150906000-150910800	Weak transcription	NHDF-Ad	bronchial
34	chr7:150906000-150911200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr7:150906000-150911800	Weak transcription	Fetal Lung	lung
36	chr7:150906400-150909400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:150906400-150909400	Weak transcription	Brain Anterior Caudate	brain
38	chr7:150906400-150910600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr7:150906600-150909400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr7:150906600-150910000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr7:150906600-150910800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr7:150906800-150912000	Weak transcription	Fetal Brain Male	brain
43	chr7:150907000-150909400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:150907000-150909600	Weak transcription	Osteobl	bone
45	chr7:150907000-150909800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:150907000-150910200	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:150907200-150909600	Weak transcription	Fetal Intestine Large	intestine
48	chr7:150907200-150910000	Weak transcription	Dnd41	blood
49	chr7:150907200-150910200	Weak transcription	Small Intestine	intestine
50	chr7:150907200-150910200	Weak transcription	NH-A	brain

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