Variant report

Variant	rs35746260
Chromosome Location	chr7:150942834-150942835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr7:150942219-150942888	HCT-116	colon:	n/a	chr7:150942514-150942527 chr7:150942768-150942777 chr7:150942763-150942773 chr7:150942513-150942528 chr7:150942556-150942570 chr7:150942511-150942525 chr7:150942530-150942544 chr7:150942811-150942821
2	CTCF	chr7:150942532-150942835	GM10248	blood:	n/a	n/a
3	MAZ	chr7:150942166-150943289	IMR90	lung:	n/a	chr7:150942517-150942527 chr7:150942764-150942774 chr7:150942214-150942224
4	SRF	chr7:150942460-150942864	K562	blood:	n/a	chr7:150942503-150942513 chr7:150942677-150942695
5	SIN3AK20	chr7:150942415-150942868	PANC-1	pancreas:	n/a	n/a
6	CTCF	chr7:150942302-150943073	K562	blood:	n/a	n/a
7	CTCF	chr7:150942450-150942970	K562	blood:	n/a	n/a
8	SMC3	chr7:150940796-150943624	SK-N-SH	brain:	n/a	chr7:150941980-150941987 chr7:150941567-150941581 chr7:150941940-150941947
9	CCNT2	chr7:150942480-150942949	K562	blood:	n/a	chr7:150942843-150942852
10	CTCF	chr7:150942274-150942887	GM19238	blood:	n/a	n/a
11	CTCF	chr7:150940291-150943350	SK-N-SH	brain:	n/a	chr7:150941938-150941951 chr7:150940479-150940497 chr7:150941560-150941581 chr7:150941941-150941954 chr7:150940585-150940598 chr7:150941920-150941929 chr7:150941977-150941986
12	CTCF	chr7:150942387-150942877	A549	lung:	n/a	n/a
13	CTCF	chr7:150942417-150942849	HepG2	liver:	n/a	n/a
14	CTCF	chr7:150942700-150942850	HAc	cerebellar:	n/a	n/a
15	CTCF	chr7:150942760-150942910	WI-38	lung:	n/a	n/a
16	YY1	chr7:150942464-150942907	HepG2	liver:	n/a	chr7:150942841-150942852
17	CTCF	chr7:150942514-150943051	GM19240	blood:	n/a	n/a
18	YY1	chr7:150942539-150942909	K562	blood:	n/a	chr7:150942841-150942852
19	CTCF	chr7:150942533-150942870	GM13977	blood:	n/a	n/a
20	CTCF	chr7:150942537-150942892	K562	blood:	n/a	n/a
21	POLR2A	chr7:150942456-150946649	IMR90	lung:	n/a	n/a
22	CTCF	chr7:150942501-150943057	GM10266	blood:	n/a	n/a
23	ZNF143	chr7:150942534-150942858	GM12878	blood:	n/a	n/a
24	YY1	chr7:150942440-150942842	GM12892	blood:	n/a	n/a
25	CTCF	chr7:150942528-150942912	K562	blood:	n/a	n/a
26	ZBTB7A	chr7:150942292-150943085	ECC-1	luminal epithelium:	n/a	chr7:150942450-150942457 chr7:150942807-150942815
27	CTCF	chr7:150941307-150943406	A549	lung:	n/a	chr7:150941938-150941951 chr7:150941560-150941581 chr7:150941941-150941954 chr7:150941920-150941929 chr7:150941977-150941986
28	RAD21	chr7:150942391-150942853	HepG2	liver:	n/a	n/a
29	MAZ	chr7:150942535-150942853	K562	blood:	n/a	chr7:150942764-150942774
30	CTCF	chr7:150942376-150942965	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr7:150942628-150942891	HUVEC	blood vessel:	n/a	n/a
32	RAD21	chr7:150942429-150942870	HepG2	liver:	n/a	n/a
33	CTCF	chr7:150942376-150942986	HCT-116	colon:	n/a	n/a
34	CTCF	chr7:150942465-150942880	GM12878	blood:	n/a	n/a
35	CTCF	chr7:150942449-150942918	GM12878	blood:	n/a	n/a
36	ZBTB7A	chr7:150942409-150943040	K562	blood:	n/a	chr7:150942450-150942457 chr7:150942807-150942815
37	TAF7	chr7:150942430-150942857	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTBP2	chr7:150942002-150943270	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr7:150942557-150942851	K562	blood:	n/a	n/a
40	CTCF	chr7:150942426-150942849	SK-N-SH_RA	brain:	n/a	n/a
41	EGR1	chr7:150942352-150942894	K562	blood:	n/a	chr7:150942514-150942527 chr7:150942768-150942777 chr7:150942763-150942773 chr7:150942513-150942528 chr7:150942556-150942570 chr7:150942511-150942525 chr7:150942530-150942544 chr7:150942811-150942821
42	CREB1	chr7:150942544-150942872	A549	lung:	n/a	n/a
43	CTCF	chr7:150942700-150942850	GM12870	blood:	n/a	n/a
44	CTCF	chr7:150942820-150942970	GM12872	blood:	n/a	n/a
45	RAD21	chr7:150942399-150942864	ECC-1	luminal epithelium:	n/a	n/a
46	CTCF	chr7:150942156-150943059	GM12892	blood:	n/a	n/a
47	CTCF	chr7:150942417-150942840	A549	lung:	n/a	n/a
48	RAD21	chr7:150942385-150942946	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTCF	chr7:150942820-150942970	HFF-Myc	foreskin:	n/a	n/a
50	CTCF	chr7:150942291-150943125	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:150941689..150943266-chr7:150971664..150974365,2	K562	blood:
2	chr7:150820570..150821671-chr7:150942151..150943243,4	K562	blood:
3	chr7:150923495..150927436-chr7:150940006..150942925,4	MCF-7	breast:
4	chr7:150938571..150942838-chr7:150950941..150954111,4	MCF-7	breast:
5	chr7:150819780..150822617-chr7:150940406..150943194,3	MCF-7	breast:
6	chr7:150941406..150944514-chr7:150945051..150947075,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243018	TF binding region
SMARCD3	TF binding region
ENSG00000133612	Chromatin interaction
ENSG00000082014	Chromatin interaction
ENSG00000033050	Chromatin interaction
ENSG00000243018	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12113924	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12531871	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12532489	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12536244	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12538823	0.90[AMR][1000 genomes]
rs13227935	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13239059	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13239247	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34129956	0.90[AMR][1000 genomes]
rs34163999	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34770061	0.83[AMR][1000 genomes]
rs34821030	0.90[AMR][1000 genomes]
rs35041510	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35093688	0.81[AMR][1000 genomes]
rs35292078	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35302282	0.88[AMR][1000 genomes]
rs35833042	0.83[AMR][1000 genomes]
rs3748098	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3800794	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55968735	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs66608097	0.90[AMR][1000 genomes]
rs67128841	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7784344	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7786151	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
5	nsv889488	chr7:150926775-150955765	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150931000-150944600	Weak transcription	Fetal Kidney	kidney
2	chr7:150931600-150944400	Weak transcription	Hela-S3	cervix
3	chr7:150940200-150943000	Enhancers	Adipose Nuclei	Adipose
4	chr7:150940200-150944800	Enhancers	Pancreas	Pancrea
5	chr7:150940200-150945400	Enhancers	K562	blood
6	chr7:150940400-150944000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:150940800-150944800	Bivalent Enhancer	Placenta	Placenta
8	chr7:150941000-150943200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr7:150941200-150943200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
10	chr7:150941200-150943200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
11	chr7:150941200-150944800	Enhancers	NHDF-Ad	bronchial
12	chr7:150941400-150943200	Weak transcription	HSMMtube	muscle
13	chr7:150941400-150944000	Bivalent Enhancer	Fetal Thymus	thymus
14	chr7:150941600-150943000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:150941600-150943800	Enhancers	Fetal Lung	lung
16	chr7:150941600-150945600	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr7:150941800-150943000	Active TSS	H9 Cell Line	embryonic stem cell
18	chr7:150941800-150943000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:150941800-150943000	Flanking Active TSS	Right Ventricle	heart
20	chr7:150941800-150943200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
21	chr7:150941800-150943400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:150941800-150945600	Flanking Active TSS	Brain Germinal Matrix	brain
23	chr7:150942000-150943000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr7:150942000-150943200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr7:150942000-150943200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:150942000-150943800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:150942000-150943800	Enhancers	Fetal Heart	heart
28	chr7:150942000-150944800	Enhancers	Esophagus	oesophagus
29	chr7:150942000-150945200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr7:150942000-150945600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:150942200-150943000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
32	chr7:150942200-150943000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:150942200-150943000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:150942200-150943000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
35	chr7:150942200-150943000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr7:150942200-150943000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
37	chr7:150942200-150943000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr7:150942200-150943000	Active TSS	Fetal Brain Female	brain
39	chr7:150942200-150943000	Flanking Active TSS	Ovary	ovary
40	chr7:150942200-150943000	Flanking Active TSS	Psoas Muscle	Psoas
41	chr7:150942200-150943200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
42	chr7:150942200-150943200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:150942200-150943200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:150942200-150943200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
45	chr7:150942200-150943800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
46	chr7:150942200-150945000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:150942200-150945000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr7:150942400-150943000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr7:150942400-150943000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:150942400-150943000	Bivalent/Poised TSS	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links