Variant report

Variant	rs34770061
Chromosome Location	chr7:150910294-150910295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150910002..150911810-chr7:150927471..150930070,2	MCF-7	breast:
2	chr7:150900947..150904902-chr7:150906819..150911270,6	MCF-7	breast:
3	chr7:150908780..150913504-chr7:150916695..150920010,4	MCF-7	breast:
4	chr7:150756323..150758655-chr7:150909019..150911809,2	K562	blood:
5	chr7:150905577..150911406-chr7:150912646..150916801,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183016	Chromatin interaction
ENSG00000033050	Chromatin interaction
ENSG00000164889	Chromatin interaction
ENSG00000033100	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1065071	1.00[ASN][1000 genomes]
rs12113924	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12531871	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12532489	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12536244	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12538823	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227935	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13239059	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13239247	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1563636	1.00[ASN][1000 genomes]
rs34129956	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34163999	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34821030	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35041510	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35093688	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35292078	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35302282	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35746260	0.83[AMR][1000 genomes]
rs35833042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748098	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3800794	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55968735	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66608097	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67128841	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6967282	0.83[ASN][1000 genomes]
rs7784344	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7786151	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150902000-150910400	Weak transcription	Pancreas	Pancrea
2	chr7:150905000-150910800	Weak transcription	Colonic Mucosa	Colon
3	chr7:150905400-150912000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:150905400-150912000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:150905600-150911600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:150905800-150910800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:150906000-150910800	Weak transcription	NHDF-Ad	bronchial
8	chr7:150906000-150911200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:150906000-150911800	Weak transcription	Fetal Lung	lung
10	chr7:150906400-150910600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:150906600-150910800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:150906800-150912000	Weak transcription	Fetal Brain Male	brain
13	chr7:150907200-150911600	Weak transcription	HSMMtube	muscle
14	chr7:150907600-150910400	Weak transcription	Brain Angular Gyrus	brain
15	chr7:150907600-150910800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:150907600-150910800	Weak transcription	HSMM	muscle
17	chr7:150907600-150911400	Weak transcription	Hela-S3	cervix
18	chr7:150907600-150922600	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr7:150907800-150922200	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:150908000-150910400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:150908000-150911400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:150908000-150922600	Strong transcription	Brain Cingulate Gyrus	brain
23	chr7:150908000-150922800	Strong transcription	Brain Hippocampus Middle	brain
24	chr7:150908200-150911800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:150908200-150922600	Strong transcription	Primary T cells from cord blood	blood
26	chr7:150908400-150910400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:150908400-150911200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:150908400-150912200	Weak transcription	Fetal Kidney	kidney
29	chr7:150908400-150922200	Strong transcription	Brain Inferior Temporal Lobe	brain
30	chr7:150908400-150923200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr7:150908600-150922200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:150908600-150922400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:150908600-150922400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr7:150908800-150917000	Strong transcription	NHEK	skin
35	chr7:150908800-150920800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:150908800-150921800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:150908800-150922000	Strong transcription	Primary B cells from cord blood	blood
38	chr7:150908800-150922200	Strong transcription	Lung	lung
39	chr7:150908800-150922400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:150908800-150922400	Strong transcription	Fetal Intestine Small	intestine
41	chr7:150908800-150922600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:150908800-150922600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:150908800-150922800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:150908800-150923000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:150908800-150923000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr7:150909000-150912000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr7:150909000-150922200	Strong transcription	Thymus	Thymus
48	chr7:150909000-150922400	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr7:150909000-150922600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr7:150909000-150923000	Strong transcription	Fetal Muscle Leg	muscle

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