Variant report

Variant	rs34272373
Chromosome Location	chr5:36920304-36920305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36920129..36922816-chr5:36925625..36927920,2	MCF-7	breast:
2	chr5:36919106..36920877-chr5:36923697..36925234,2	K562	blood:
3	chr5:36919106..36922235-chr5:36923697..36927353,5	K562	blood:
4	chr5:36913361..36915325-chr5:36918207..36920835,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs13156908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13162626	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163996	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13164726	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13165105	0.84[EUR][1000 genomes]
rs13176635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13181330	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13181860	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13186745	0.86[EUR][1000 genomes]
rs13187028	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1353256	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16903418	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17312211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs188383	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213513	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs289216	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs293753	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs293754	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs293775	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298973	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34079524	0.86[EUR][1000 genomes]
rs34218486	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34697946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34807025	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34911537	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35127161	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35167018	0.92[EUR][1000 genomes]
rs35357341	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35394109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35809470	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36035695	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3776594	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3899482	0.84[EUR][1000 genomes]
rs58123624	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62654860	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6868809	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6894622	0.86[EUR][1000 genomes]
rs71617772	0.96[EUR][1000 genomes]
rs71617774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093888	0.86[EUR][1000 genomes]
rs7700441	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7704442	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7716192	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs923957	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv830264	chr5:36887002-36941494	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36895800-36928600	Weak transcription	HSMM	muscle
2	chr5:36899000-36926400	Weak transcription	Gastric	stomach
3	chr5:36905200-36927800	Weak transcription	Psoas Muscle	Psoas
4	chr5:36907400-36928600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:36907400-36938200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:36909400-36920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:36909400-36921000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:36910200-36928000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:36911200-36928600	Weak transcription	A549	lung
10	chr5:36911400-36920800	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:36911600-36928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:36913000-36925800	Weak transcription	Primary T cells from cord blood	blood
13	chr5:36913800-36931400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr5:36918800-36921800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:36919000-36921000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:36919000-36921800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:36919000-36923200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr5:36919200-36921000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr5:36919400-36921000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr5:36919400-36921800	Enhancers	Fetal Heart	heart
21	chr5:36919600-36920400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr5:36919600-36920400	Enhancers	Brain Anterior Caudate	brain
23	chr5:36919600-36921600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr5:36919600-36928000	Weak transcription	Ovary	ovary
25	chr5:36919600-36928000	Weak transcription	Small Intestine	intestine
26	chr5:36919600-36931400	Weak transcription	Left Ventricle	heart
27	chr5:36919600-36938200	Weak transcription	Pancreas	Pancrea
28	chr5:36919800-36920600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr5:36919800-36921600	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr5:36919800-36923000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr5:36919800-36925800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr5:36919800-36926200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:36919800-36953000	Weak transcription	Primary B cells from peripheral blood	blood
34	chr5:36919800-36961600	Weak transcription	K562	blood
35	chr5:36920000-36928200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr5:36920000-36928600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr5:36920200-36920400	Enhancers	Primary hematopoietic stem cells	blood
38	chr5:36920200-36920600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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