Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:166458815..166461765-chr1:166845065..166847210,2	MCF-7	breast:
2	chr1:166805959..166811139-chr1:166841080..166848642,15	MCF-7	breast:
3	chr1:166832382..166838058-chr1:166843027..166847962,8	MCF-7	breast:
4	chr1:166806593..166810261-chr1:166844073..166846866,6	K562	blood:
5	chr1:166805232..166812474-chr1:166842359..166847542,11	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10800270	0.85[ASN][1000 genomes]
rs10800276	0.98[ASN][1000 genomes]
rs11576904	0.88[EUR][1000 genomes]
rs11583927	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584352	1.00[ASN][1000 genomes]
rs12062326	0.80[ASN][1000 genomes]
rs12562794	0.84[ASN][1000 genomes]
rs1543313	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2038020	0.93[EUR][1000 genomes]
rs2038022	0.93[EUR][1000 genomes]
rs2072740	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2075946	0.80[ASN][1000 genomes]
rs2223221	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2280995	1.00[ASN][1000 genomes]
rs2294195	0.95[ASN][1000 genomes]
rs2294220	0.83[EUR][1000 genomes]
rs4656516	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4657609	0.98[ASN][1000 genomes]
rs4657612	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4657613	0.97[ASN][1000 genomes]
rs7513457	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9633326	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166846000-166846800	Enhancers	Liver	Liver
2	chr1:166846200-166846800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:166846200-166846800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:166846200-166846800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:166846200-166846800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr1:166846200-166846800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:166846200-166846800	Enhancers	HepG2	liver
8	chr1:166846200-166853200	Weak transcription	Right Atrium	heart
9	chr1:166846400-166846800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:166846400-166847000	Enhancers	Dnd41	blood
11	chr1:166846400-166847000	Enhancers	K562	blood
12	chr1:166846600-166846800	Enhancers	Primary T cells fromperipheralblood	blood

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