Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:166853586..166858424-chr1:166860455..166864080,4	K562	blood:
2	chr1:166860372..166862155-chr1:166864305..166866609,2	K562	blood:
3	chr1:166844133..166846859-chr1:166861092..166863803,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152382	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10800270	0.83[ASN][1000 genomes]
rs10800276	1.00[ASN][1000 genomes]
rs11576904	0.94[EUR][1000 genomes]
rs11583927	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11584352	0.98[ASN][1000 genomes]
rs12562794	0.83[ASN][1000 genomes]
rs1543313	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2038020	0.96[EUR][1000 genomes]
rs2038022	0.96[EUR][1000 genomes]
rs2072740	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2223221	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280995	0.98[ASN][1000 genomes]
rs2294195	0.93[ASN][1000 genomes]
rs2294220	0.88[EUR][1000 genomes]
rs34381372	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4656516	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4657609	0.96[ASN][1000 genomes]
rs4657613	0.99[ASN][1000 genomes]
rs7513457	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633326	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166856600-166862000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:166861600-166863200	Enhancers	Colon Smooth Muscle	Colon

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