Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166852398..166855060-chr1:166856070..166859202,3	MCF-7	breast:
2	chr1:166853586..166858424-chr1:166860455..166864080,4	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10800270	0.83[ASN][1000 genomes]
rs10800276	1.00[ASN][1000 genomes]
rs11576904	0.94[EUR][1000 genomes]
rs11583927	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11584352	0.98[ASN][1000 genomes]
rs12562794	0.83[ASN][1000 genomes]
rs1543313	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2038020	0.96[EUR][1000 genomes]
rs2038022	0.96[EUR][1000 genomes]
rs2072740	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2223221	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280995	0.98[ASN][1000 genomes]
rs2294195	0.93[ASN][1000 genomes]
rs2294220	0.88[EUR][1000 genomes]
rs34381372	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4656516	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4657609	0.96[ASN][1000 genomes]
rs4657612	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4657613	0.99[ASN][1000 genomes]
rs9633326	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166853600-166857800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:166854000-166857200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:166854200-166857400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:166854200-166858400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:166855000-166858000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:166855400-166860400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:166855600-166859600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:166856400-166857800	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:166856600-166857800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:166856600-166862000	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search: