Variant report

Variant	rs34406556
Chromosome Location	chr9:96084632-96084633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96083217..96085199-chr9:96086274..96088449,2	MCF-7	breast:
2	chr9:96079198..96081765-chr9:96083546..96088659,5	MCF-7	breast:
3	chr9:96082960..96085934-chr9:96086076..96089070,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12550993	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12552078	0.84[ASN][1000 genomes]
rs12554664	0.84[ASN][1000 genomes]
rs12554984	0.81[ASN][1000 genomes]
rs13290287	0.81[ASN][1000 genomes]
rs13296817	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13298340	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16908998	0.87[ASN][1000 genomes]
rs16909009	0.84[ASN][1000 genomes]
rs16909074	0.81[ASN][1000 genomes]
rs2298244	0.84[ASN][1000 genomes]
rs34360996	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34590502	0.81[ASN][1000 genomes]
rs35383386	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35807838	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs36081907	0.82[EUR][1000 genomes]
rs58361139	0.81[ASN][1000 genomes]
rs62572859	0.81[ASN][1000 genomes]
rs6479474	0.86[EUR][1000 genomes]
rs7042943	0.82[EUR][1000 genomes]
rs7046002	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7875155	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893583	chr9:95996573-96091688	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96063800-96088600	Weak transcription	Right Atrium	heart
2	chr9:96067600-96086800	Weak transcription	Fetal Brain Male	brain
3	chr9:96067800-96086800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:96068200-96086200	Weak transcription	Brain Anterior Caudate	brain
5	chr9:96068400-96100400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:96070600-96087800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:96074000-96088600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:96076200-96088400	Weak transcription	A549	lung
9	chr9:96077000-96085200	Strong transcription	Fetal Brain Female	brain
10	chr9:96079200-96088600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:96079600-96094400	Weak transcription	Stomach Mucosa	stomach
12	chr9:96080400-96087200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:96080400-96090400	Weak transcription	Gastric	stomach
14	chr9:96080800-96088000	Weak transcription	Right Ventricle	heart
15	chr9:96081000-96086200	Weak transcription	HepG2	liver
16	chr9:96081000-96100600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:96081200-96088000	Weak transcription	Left Ventricle	heart
18	chr9:96081600-96088000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:96081800-96088000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:96082200-96085400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr9:96082200-96086400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:96082400-96084800	Weak transcription	Colonic Mucosa	Colon
23	chr9:96082600-96086800	Weak transcription	Fetal Intestine Large	intestine
24	chr9:96082600-96088200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:96083200-96086800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr9:96083200-96087400	Weak transcription	Fetal Muscle Leg	muscle
27	chr9:96083200-96100400	Weak transcription	Fetal Stomach	stomach
28	chr9:96083400-96094400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:96083800-96086200	Weak transcription	Spleen	Spleen
30	chr9:96083800-96086600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr9:96083800-96087000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:96083800-96087400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:96083800-96088400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:96083800-96088400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr9:96083800-96088400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:96083800-96088400	Weak transcription	Fetal Heart	heart
37	chr9:96083800-96090400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:96083800-96090800	Weak transcription	Brain Germinal Matrix	brain
39	chr9:96083800-96094400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr9:96084000-96087400	Weak transcription	Pancreas	Pancrea
41	chr9:96084600-96092400	Weak transcription	Fetal Intestine Small	intestine

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