Variant report

Variant	rs13298340
Chromosome Location	chr9:96093023-96093024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12550993	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12554984	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13290287	1.00[ASN][1000 genomes]
rs13296817	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909074	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34187850	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34360996	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34406556	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34590502	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35383386	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807838	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36081907	0.86[EUR][1000 genomes]
rs58361139	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62572859	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479474	0.90[EUR][1000 genomes]
rs7042943	0.86[EUR][1000 genomes]
rs7046002	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870747	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96068400-96100400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:96079600-96094400	Weak transcription	Stomach Mucosa	stomach
3	chr9:96081000-96100600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:96083200-96100400	Weak transcription	Fetal Stomach	stomach
5	chr9:96083400-96094400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:96083800-96094400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:96087000-96093400	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:96089000-96093200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:96089000-96093200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:96089000-96093200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:96089000-96093400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:96089200-96099400	Weak transcription	Fetal Brain Female	brain
13	chr9:96089400-96093400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:96091400-96096400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:96091600-96093600	Enhancers	HepG2	liver
16	chr9:96092000-96096400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:96092600-96094000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr9:96092800-96093600	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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