Variant report

Variant	rs34187850
Chromosome Location	chr9:96101658-96101659
allele	CA/TC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12550993	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12554984	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13290287	0.96[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13296817	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13298340	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16909074	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34360996	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34590502	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35383386	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35807838	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36081907	0.82[EUR][1000 genomes]
rs58361139	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62572859	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62574477	0.81[EUR][1000 genomes]
rs62574479	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6479474	0.86[EUR][1000 genomes]
rs7042943	0.82[EUR][1000 genomes]
rs7046002	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7870747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1798245	chr9:96098930-96120432	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96098600-96108000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:96098800-96105000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr9:96099000-96102800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr9:96099000-96103400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr9:96099800-96102600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr9:96100000-96103000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr9:96100200-96102800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr9:96101200-96102000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:96101400-96107200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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