Variant report

Variant	rs62574479
Chromosome Location	chr9:96112197-96112198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12554984	0.84[AMR][1000 genomes]
rs16909074	0.87[AMR][1000 genomes]
rs34187850	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34590502	0.87[AMR][1000 genomes]
rs58361139	0.83[AMR][1000 genomes]
rs62572859	0.87[AMR][1000 genomes]
rs7870747	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1798245	chr9:96098930-96120432	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96107400-96113000	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr9:96108000-96113000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr9:96109200-96127800	Weak transcription	Right Atrium	heart
4	chr9:96109400-96113000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr9:96110000-96112400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:96110600-96114000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:96111000-96112200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr9:96111000-96112400	Active TSS	H1 Cell Line	embryonic stem cell
9	chr9:96111000-96113000	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr9:96111000-96114000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr9:96111200-96115800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:96111200-96122400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:96111600-96113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:96111600-96115600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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