Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12550993	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12554984	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13290287	1.00[ASN][1000 genomes]
rs13296817	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13298340	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34187850	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34360996	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34406556	0.81[ASN][1000 genomes]
rs34590502	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35383386	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807838	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36081907	0.85[EUR][1000 genomes]
rs56833280	0.80[AMR][1000 genomes]
rs58361139	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62574479	0.87[AMR][1000 genomes]
rs6479474	0.89[EUR][1000 genomes]
rs7042943	0.85[EUR][1000 genomes]
rs7046002	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870747	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96068400-96100400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:96081000-96100600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96083200-96100400	Weak transcription	Fetal Stomach	stomach
4	chr9:96089200-96099400	Weak transcription	Fetal Brain Female	brain
5	chr9:96094000-96099800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:96094400-96099000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:96095000-96100000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:96095200-96099800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:96096200-96097800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:96096400-96098800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:96096400-96099000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:96096400-96099000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:96096400-96099000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:96097000-96097800	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr9:96097200-96100200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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