Variant report

Variant	rs16909074
Chromosome Location	chr9:96102832-96102833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96093481..96095896-chr9:96100994..96102832,2	MCF-7	breast:
2	chr9:96102610..96104810-chr9:96126925..96128745,2	MCF-7	breast:
3	chr9:96102234..96103753-chr9:96106109..96107624,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10992715	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap]
rs11999013	0.82[GIH][hapmap]
rs12550993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12554984	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13290287	1.00[ASN][1000 genomes]
rs13296817	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13298340	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254351	1.00[CEU][hapmap]
rs34187850	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34360996	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34406556	0.81[ASN][1000 genomes]
rs34590502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35383386	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807838	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36081907	0.83[EUR][1000 genomes]
rs4743925	1.00[CEU][hapmap]
rs4743926	1.00[CEU][hapmap]
rs4744244	1.00[CEU][hapmap]
rs56833280	0.80[AMR][1000 genomes]
rs58361139	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62572859	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62574479	0.87[AMR][1000 genomes]
rs6479474	0.87[CEU][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs6479489	1.00[CEU][hapmap]
rs6479490	1.00[CEU][hapmap]
rs6479491	1.00[CEU][hapmap]
rs7021710	0.88[CEU][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap]
rs7042943	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs7046002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870747	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1798245	chr9:96098930-96120432	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96098600-96108000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:96098800-96105000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr9:96099000-96103400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr9:96100000-96103000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
5	chr9:96101400-96107200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:96101800-96103200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:96102200-96103200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:96102600-96106000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:96102600-96107600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:96102800-96103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:96102800-96103000	Weak transcription	Pancreas	Pancrea
12	chr9:96102800-96104800	Weak transcription	Gastric	stomach
13	chr9:96102800-96105800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:96102800-96106000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:96102800-96106000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:96102800-96106200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr9:96102800-96107200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr9:96102800-96107800	Weak transcription	Fetal Brain Male	brain
19	chr9:96102800-96108200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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