Variant report

Variant	rs34530827
Chromosome Location	chr11:75065292-75065293
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75063194..75065749-chr11:75140167..75143127,2	MCF-7	breast:
2	chr11:75064179..75065852-chr11:75082036..75083611,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149243	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10899087	0.95[ASN][1000 genomes]
rs11236397	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236398	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11236401	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236405	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11236416	0.88[AMR][1000 genomes]
rs11602596	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605734	0.82[AMR][1000 genomes]
rs12269895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270766	0.88[AMR][1000 genomes]
rs12271518	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271945	0.88[AMR][1000 genomes]
rs12278108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283536	0.82[AMR][1000 genomes]
rs12291595	0.88[AMR][1000 genomes]
rs12577286	0.95[ASN][1000 genomes]
rs12790302	0.82[AMR][1000 genomes]
rs12794577	0.88[AMR][1000 genomes]
rs12797588	0.95[ASN][1000 genomes]
rs34775308	0.82[AMR][1000 genomes]
rs4121885	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7101921	0.85[AMR][1000 genomes]
rs7116977	0.85[AMR][1000 genomes]
rs7120396	0.85[AMR][1000 genomes]
rs7131065	0.82[AMR][1000 genomes]
rs73004237	0.85[AMR][1000 genomes]
rs7929742	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv522447	chr11:74982939-75068767	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75063400-75067600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:75063600-75076800	Weak transcription	Hela-S3	cervix
3	chr11:75063800-75067000	Weak transcription	HMEC	breast
4	chr11:75063800-75067400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:75064000-75067400	Weak transcription	HSMM	muscle
6	chr11:75064000-75067600	Weak transcription	HSMMtube	muscle
7	chr11:75064000-75067600	Weak transcription	NHDF-Ad	bronchial
8	chr11:75064200-75065600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:75064200-75066800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:75064200-75067400	Weak transcription	HUVEC	blood vessel
11	chr11:75064200-75067600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:75064200-75067600	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:75064200-75068200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:75064200-75068600	Weak transcription	Small Intestine	intestine
15	chr11:75064200-75086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:75064400-75065400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:75064400-75066400	Weak transcription	Gastric	stomach
18	chr11:75064400-75066800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:75064400-75067000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:75064400-75067000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:75064400-75067600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:75064400-75067600	Weak transcription	Spleen	Spleen
23	chr11:75064600-75067000	Weak transcription	Primary T cells from cord blood	blood
24	chr11:75064600-75067000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:75064600-75071800	Weak transcription	Primary B cells from cord blood	blood
26	chr11:75064800-75066400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:75064800-75066800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:75065000-75065400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:75065000-75065400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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