Variant report

Variant	rs4121885
Chromosome Location	chr11:75073534-75073535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75059438..75065729-chr11:75070757..75077420,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10899087	0.90[ASN][1000 genomes]
rs11236397	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236398	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11236401	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236405	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11236416	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11602596	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11605734	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12269895	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12270766	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12271518	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12271945	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12278108	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12283536	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12291595	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12577286	0.90[ASN][1000 genomes]
rs12790302	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12794577	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12797588	0.90[ASN][1000 genomes]
rs34530827	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34775308	0.88[AMR][1000 genomes]
rs35257045	0.82[AMR][1000 genomes]
rs7101921	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7116977	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7120396	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7131065	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73004237	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7929742	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv468637	chr11:75069871-75075866	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv555445	chr11:75069871-75075866	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv516556	chr11:75071783-75080920	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75063600-75076800	Weak transcription	Hela-S3	cervix
2	chr11:75064200-75086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:75066600-75076000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:75067200-75076400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:75068800-75080800	Weak transcription	Spleen	Spleen
6	chr11:75072200-75075800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:75072200-75076800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:75072200-75077000	Weak transcription	Primary B cells from cord blood	blood
9	chr11:75072400-75076000	Weak transcription	Primary monocytes fromperipheralblood	blood

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