Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:75103627..75108787-chr11:75108946..75114256,11	MCF-7	breast:
2	chr11:75103317..75106896-chr11:75110221..75113394,5	MCF-7	breast:
3	chr11:75104656..75107208-chr11:75134725..75136452,2	MCF-7	breast:
4	chr11:75105108..75108340-chr11:75134549..75138443,3	MCF-7	breast:
5	chr11:75105345..75108167-chr11:75238788..75240390,2	K562	blood:
6	chr11:75105664..75107948-chr11:75138997..75142594,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11236405	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11236416	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11602383	1.00[ASN][1000 genomes]
rs11604864	1.00[ASN][1000 genomes]
rs11605734	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270766	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12271945	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12283536	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291595	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12790302	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12794577	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34775308	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990111	1.00[ASN][1000 genomes]
rs35242615	1.00[ASN][1000 genomes]
rs36089315	1.00[ASN][1000 genomes]
rs4121885	0.82[AMR][1000 genomes]
rs56386203	1.00[ASN][1000 genomes]
rs67965584	1.00[ASN][1000 genomes]
rs7101921	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116977	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7120396	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7131065	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73004237	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	esv1799276	chr11:75104200-75135434	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75100200-75110200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:75100400-75106800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:75100400-75110400	Weak transcription	HSMMtube	muscle
4	chr11:75100600-75110400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:75103200-75110200	Weak transcription	Hela-S3	cervix
6	chr11:75105200-75106800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:75105400-75106800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:75105600-75110200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:75105800-75106600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:75106000-75106800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:75106000-75106800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:75106000-75107000	Enhancers	Brain Substantia Nigra	brain
13	chr11:75106000-75107600	Enhancers	Spleen	Spleen
14	chr11:75106200-75110200	Weak transcription	Brain Anterior Caudate	brain
15	chr11:75106200-75110200	Weak transcription	K562	blood
16	chr11:75106200-75110400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:75106400-75107000	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:75106400-75107000	Enhancers	HepG2	liver

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