Variant report

Variant	rs56386203
Chromosome Location	chr11:75036745-75036746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75035174..75037404-chr11:75040078..75041658,2	K562	blood:
2	chr11:75024014..75025553-chr11:75034612..75037576,2	MCF-7	breast:
3	chr11:75026168..75029879-chr11:75034500..75038178,3	MCF-7	breast:
4	chr11:75035911..75038821-chr11:75120189..75122364,2	MCF-7	breast:
5	chr11:75035315..75036959-chr11:75209813..75212313,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11236405	1.00[ASN][1000 genomes]
rs11236416	1.00[ASN][1000 genomes]
rs11602383	1.00[ASN][1000 genomes]
rs11604864	1.00[ASN][1000 genomes]
rs11605734	1.00[ASN][1000 genomes]
rs12270766	1.00[ASN][1000 genomes]
rs12271945	1.00[ASN][1000 genomes]
rs12283536	1.00[ASN][1000 genomes]
rs12291595	1.00[ASN][1000 genomes]
rs12790302	1.00[ASN][1000 genomes]
rs12794577	1.00[ASN][1000 genomes]
rs34775308	1.00[ASN][1000 genomes]
rs34990111	1.00[ASN][1000 genomes]
rs35242615	1.00[ASN][1000 genomes]
rs35257045	1.00[ASN][1000 genomes]
rs36089315	1.00[ASN][1000 genomes]
rs67965584	1.00[ASN][1000 genomes]
rs7101921	1.00[ASN][1000 genomes]
rs7116977	1.00[ASN][1000 genomes]
rs7120396	1.00[ASN][1000 genomes]
rs7131065	1.00[ASN][1000 genomes]
rs73004237	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
5	nsv522447	chr11:74982939-75068767	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74998800-75041400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:75000200-75037600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:75021000-75037600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:75023400-75039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:75025400-75039600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:75025600-75036800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:75025600-75037000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:75025800-75039600	Weak transcription	Thymus	Thymus
9	chr11:75027000-75039400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:75028000-75037600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:75028600-75038000	Enhancers	Pancreas	Pancrea
12	chr11:75029000-75039600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:75029200-75039600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:75030200-75037400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr11:75030200-75037400	Weak transcription	Fetal Thymus	thymus
16	chr11:75030200-75037400	Genic enhancers	Lung	lung
17	chr11:75030800-75036800	Weak transcription	NHEK	skin
18	chr11:75031600-75036800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:75031600-75036800	Weak transcription	Esophagus	oesophagus
20	chr11:75031600-75039400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:75031800-75039200	Weak transcription	Fetal Kidney	kidney
22	chr11:75032000-75036800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:75032000-75037000	Weak transcription	Fetal Brain Male	brain
24	chr11:75032200-75036800	Weak transcription	Brain Angular Gyrus	brain
25	chr11:75032200-75036800	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:75032200-75036800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:75032200-75036800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:75032200-75037000	Weak transcription	Ovary	ovary
29	chr11:75032200-75039400	Weak transcription	Right Atrium	heart
30	chr11:75032200-75039600	Weak transcription	Left Ventricle	heart
31	chr11:75032600-75039200	Weak transcription	Fetal Brain Female	brain
32	chr11:75032800-75037200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:75033000-75036800	Weak transcription	Small Intestine	intestine
34	chr11:75033000-75038000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr11:75033000-75039600	Weak transcription	Right Ventricle	heart
36	chr11:75033200-75036800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:75033200-75037000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:75033400-75038000	Enhancers	Primary T cells from cord blood	blood
39	chr11:75033600-75037800	Genic enhancers	Fetal Intestine Small	intestine
40	chr11:75034200-75037000	Weak transcription	K562	blood
41	chr11:75034400-75036800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr11:75034400-75038000	Enhancers	Stomach Mucosa	stomach
43	chr11:75034600-75039400	Weak transcription	Fetal Lung	lung
44	chr11:75034800-75037000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:75035000-75036800	Weak transcription	Adipose Nuclei	Adipose
46	chr11:75035000-75037000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:75035000-75039400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:75035200-75038000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:75035200-75040000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:75035200-75051200	Weak transcription	H9 Cell Line	embryonic stem cell

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