Variant report

Variant	rs12283536
Chromosome Location	chr11:75099318-75099319
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75098909..75103589-chr11:75108306..75112041,8	MCF-7	breast:
2	chr11:75098408..75100010-chr11:75150323..75152264,2	MCF-7	breast:
3	chr11:75097746..75099741-chr11:75273304..75275914,2	MCF-7	breast:
4	chr11:75053704..75056779-chr11:75098443..75101386,3	MCF-7	breast:
5	chr11:75098442..75101269-chr11:75243571..75246252,2	K562	blood:
6	chr11:75098397..75102826-chr11:75109397..75111957,5	MCF-7	breast:
7	chr11:75092274..75095773-chr11:75096854..75099923,3	K562	blood:
8	chr11:75090671..75094563-chr11:75095690..75099742,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000149257	Chromatin interaction
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11236397	0.82[AMR][1000 genomes]
rs11236398	0.82[AMR][1000 genomes]
rs11236405	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236416	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602383	1.00[ASN][1000 genomes]
rs11602596	0.82[AMR][1000 genomes]
rs11604864	1.00[ASN][1000 genomes]
rs11605734	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269895	0.82[AMR][1000 genomes]
rs12270766	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271518	0.82[AMR][1000 genomes]
rs12271945	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278108	0.82[AMR][1000 genomes]
rs12291595	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790302	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794577	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34530827	0.82[AMR][1000 genomes]
rs34775308	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990111	1.00[ASN][1000 genomes]
rs35242615	1.00[ASN][1000 genomes]
rs35257045	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36089315	1.00[ASN][1000 genomes]
rs4121885	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56386203	1.00[ASN][1000 genomes]
rs67965584	1.00[ASN][1000 genomes]
rs7101921	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116977	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120396	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131065	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73004237	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75083800-75099400	Weak transcription	Right Atrium	heart
2	chr11:75087400-75099400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:75092000-75099400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:75092200-75099400	Weak transcription	Pancreas	Pancrea
5	chr11:75092400-75099400	Weak transcription	Colonic Mucosa	Colon
6	chr11:75092400-75099400	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:75092400-75099400	Weak transcription	Spleen	Spleen
8	chr11:75094200-75100400	Enhancers	Placenta	Placenta
9	chr11:75094600-75099400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:75094600-75099400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:75094800-75099400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:75094800-75099600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:75094800-75100200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:75095400-75100000	Enhancers	HUVEC	blood vessel
15	chr11:75095600-75099600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:75095800-75099400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:75095800-75099400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:75095800-75099400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:75095800-75099600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:75096000-75099400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:75096000-75099400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:75096000-75099400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:75096000-75099400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:75096000-75099400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:75096000-75099400	Weak transcription	Adipose Nuclei	Adipose
26	chr11:75096000-75099400	Weak transcription	Liver	Liver
27	chr11:75096000-75099400	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:75096000-75099400	Weak transcription	Brain Substantia Nigra	brain
29	chr11:75096000-75099400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:75096000-75099400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:75096000-75099400	Weak transcription	Fetal Stomach	stomach
32	chr11:75096000-75099400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:75096000-75099400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:75096000-75099600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:75096000-75099600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr11:75096000-75099600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:75096000-75099600	Weak transcription	Brain Angular Gyrus	brain
38	chr11:75096000-75099600	Weak transcription	Brain Anterior Caudate	brain
39	chr11:75096000-75099600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:75096000-75099600	Weak transcription	Fetal Thymus	thymus
41	chr11:75096000-75099600	Weak transcription	Dnd41	blood
42	chr11:75097200-75100400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr11:75097400-75100200	Enhancers	Fetal Intestine Small	intestine
44	chr11:75097600-75099400	Weak transcription	Stomach Mucosa	stomach
45	chr11:75097600-75100400	Enhancers	Fetal Intestine Large	intestine
46	chr11:75097800-75099400	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr11:75098000-75099600	Enhancers	HSMMtube	muscle
48	chr11:75098000-75099800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:75098000-75100600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:75098200-75099400	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links