Variant report

Variant	rs73004237
Chromosome Location	chr11:75078236-75078237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75077164..75078876-chr11:75082992..75084956,2	MCF-7	breast:
2	chr11:75044535..75045443-chr11:75077986..75078514,2	MCF-7	breast:
3	chr11:75061482..75063313-chr11:75077866..75079775,4	MCF-7	breast:
4	chr11:75076999..75080604-chr11:75081592..75085575,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11236397	0.85[AMR][1000 genomes]
rs11236398	0.85[AMR][1000 genomes]
rs11236401	0.83[AMR][1000 genomes]
rs11236405	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236416	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602383	1.00[ASN][1000 genomes]
rs11602596	0.85[AMR][1000 genomes]
rs11604864	1.00[ASN][1000 genomes]
rs11605734	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269895	0.85[AMR][1000 genomes]
rs12270766	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271518	0.85[AMR][1000 genomes]
rs12271945	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278108	0.85[AMR][1000 genomes]
rs12283536	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291595	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790302	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794577	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34530827	0.85[AMR][1000 genomes]
rs34775308	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990111	1.00[ASN][1000 genomes]
rs35242615	1.00[ASN][1000 genomes]
rs35257045	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36089315	1.00[ASN][1000 genomes]
rs4121885	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56386203	1.00[ASN][1000 genomes]
rs67965584	1.00[ASN][1000 genomes]
rs7101921	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116977	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120396	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131065	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv516556	chr11:75071783-75080920	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75064200-75086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:75068800-75080800	Weak transcription	Spleen	Spleen
3	chr11:75076000-75078800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:75076000-75080400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:75076000-75080600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:75076000-75080800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:75076400-75079400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:75076800-75078400	Enhancers	Hela-S3	cervix
9	chr11:75077200-75079200	Enhancers	Placenta	Placenta
10	chr11:75077200-75083000	Weak transcription	Fetal Lung	lung
11	chr11:75077400-75080800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:75077600-75080600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:75077600-75080600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:75077600-75083200	Weak transcription	Adipose Nuclei	Adipose
15	chr11:75077800-75081600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:75078000-75078400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr11:75078000-75080600	Weak transcription	Primary B cells from cord blood	blood
18	chr11:75078200-75080800	Weak transcription	Stomach Mucosa	stomach
19	chr11:75078200-75082800	Weak transcription	K562	blood

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