Variant report

Variant	rs11602383
Chromosome Location	chr11:75028376-75028377
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75022848..75024438-chr11:75027492..75030341,2	K562	blood:
2	chr11:75022624..75025520-chr11:75027160..75030894,5	K562	blood:
3	chr11:75026168..75029879-chr11:75034500..75038178,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11236405	1.00[ASN][1000 genomes]
rs11236416	1.00[ASN][1000 genomes]
rs11604864	1.00[ASN][1000 genomes]
rs11605734	1.00[ASN][1000 genomes]
rs12270766	1.00[ASN][1000 genomes]
rs12271945	1.00[ASN][1000 genomes]
rs12283536	1.00[ASN][1000 genomes]
rs12291595	1.00[ASN][1000 genomes]
rs12790302	1.00[ASN][1000 genomes]
rs12794577	1.00[ASN][1000 genomes]
rs34775308	1.00[ASN][1000 genomes]
rs34990111	1.00[ASN][1000 genomes]
rs35242615	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35257045	1.00[ASN][1000 genomes]
rs36089315	1.00[ASN][1000 genomes]
rs56386203	1.00[ASN][1000 genomes]
rs67965584	1.00[ASN][1000 genomes]
rs7101921	1.00[ASN][1000 genomes]
rs7116977	1.00[ASN][1000 genomes]
rs7120396	1.00[ASN][1000 genomes]
rs7131065	1.00[ASN][1000 genomes]
rs73004237	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
5	nsv522447	chr11:74982939-75068767	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74998800-75041400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:75000200-75037600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:75000400-75033000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:75005200-75033000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:75017000-75028400	Weak transcription	Fetal Brain Male	brain
6	chr11:75018200-75034800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:75021000-75037600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:75023200-75028600	Weak transcription	Psoas Muscle	Psoas
9	chr11:75023200-75031200	Weak transcription	Fetal Brain Female	brain
10	chr11:75023400-75039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:75023600-75028600	Weak transcription	A549	lung
12	chr11:75023800-75030000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:75024600-75029000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:75024800-75029000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:75024800-75032800	Weak transcription	Primary T cells from cord blood	blood
16	chr11:75025000-75030400	Weak transcription	Fetal Kidney	kidney
17	chr11:75025200-75030200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:75025400-75028400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:75025400-75028400	Strong transcription	Fetal Intestine Small	intestine
20	chr11:75025400-75028600	Weak transcription	Fetal Intestine Large	intestine
21	chr11:75025400-75028600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:75025400-75030200	Weak transcription	NHLF	lung
23	chr11:75025400-75030400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:75025400-75036600	Weak transcription	Hela-S3	cervix
25	chr11:75025400-75039600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:75025600-75028400	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:75025600-75028600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:75025600-75028600	Weak transcription	Colonic Mucosa	Colon
29	chr11:75025600-75028600	Strong transcription	Fetal Stomach	stomach
30	chr11:75025600-75028600	Weak transcription	Left Ventricle	heart
31	chr11:75025600-75028600	Weak transcription	Right Atrium	heart
32	chr11:75025600-75029800	Weak transcription	Fetal Lung	lung
33	chr11:75025600-75030200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:75025600-75030200	Weak transcription	Esophagus	oesophagus
35	chr11:75025600-75030400	Weak transcription	Ovary	ovary
36	chr11:75025600-75031400	Weak transcription	Placenta	Placenta
37	chr11:75025600-75033800	Weak transcription	Liver	Liver
38	chr11:75025600-75036600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:75025600-75036600	Weak transcription	NHDF-Ad	bronchial
40	chr11:75025600-75036800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:75025600-75037000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:75025800-75028400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:75025800-75028600	Weak transcription	Pancreas	Pancrea
44	chr11:75025800-75029800	Weak transcription	HepG2	liver
45	chr11:75025800-75030800	Weak transcription	Small Intestine	intestine
46	chr11:75025800-75039600	Weak transcription	Thymus	Thymus
47	chr11:75026200-75028400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:75026200-75028400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:75026200-75028400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:75026200-75028600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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