Variant report

Variant	rs345356
Chromosome Location	chr4:86781669-86781670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10034094	0.81[EUR][1000 genomes]
rs11097078	0.83[EUR][1000 genomes]
rs11721455	0.83[ASN][1000 genomes]
rs11724703	0.83[ASN][1000 genomes]
rs11734835	0.83[ASN][1000 genomes]
rs11736203	0.83[ASN][1000 genomes]
rs11931275	0.83[ASN][1000 genomes]
rs12152604	0.90[EUR][1000 genomes]
rs12152609	0.89[EUR][1000 genomes]
rs13123763	0.83[ASN][1000 genomes]
rs13132091	0.83[ASN][1000 genomes]
rs13134118	0.83[ASN][1000 genomes]
rs13134252	0.83[ASN][1000 genomes]
rs13150958	0.83[ASN][1000 genomes]
rs1473012	0.89[EUR][1000 genomes]
rs1473013	0.89[EUR][1000 genomes]
rs1473014	0.89[EUR][1000 genomes]
rs1473015	0.89[EUR][1000 genomes]
rs1510583	0.81[EUR][1000 genomes]
rs1606017	0.89[EUR][1000 genomes]
rs17011082	0.83[ASN][1000 genomes]
rs17011102	0.83[ASN][1000 genomes]
rs1812330	0.83[ASN][1000 genomes]
rs1812331	0.83[ASN][1000 genomes]
rs2123361	0.83[ASN][1000 genomes]
rs2167715	0.83[ASN][1000 genomes]
rs2601841	0.83[ASN][1000 genomes]
rs2601842	0.83[ASN][1000 genomes]
rs2601850	0.83[ASN][1000 genomes]
rs2601869	0.81[EUR][1000 genomes]
rs2665870	0.83[ASN][1000 genomes]
rs2665874	0.83[ASN][1000 genomes]
rs28641527	0.85[EUR][1000 genomes]
rs2869406	0.83[EUR][1000 genomes]
rs28698740	0.85[EUR][1000 genomes]
rs28770594	0.89[EUR][1000 genomes]
rs28814882	0.89[EUR][1000 genomes]
rs345331	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345332	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345336	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345348	0.89[EUR][1000 genomes]
rs345353	0.89[EUR][1000 genomes]
rs345360	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346468	0.83[ASN][1000 genomes]
rs346481	0.83[ASN][1000 genomes]
rs346519	0.83[ASN][1000 genomes]
rs34836472	0.83[ASN][1000 genomes]
rs35114569	0.83[ASN][1000 genomes]
rs35852536	0.83[ASN][1000 genomes]
rs35941601	0.83[ASN][1000 genomes]
rs36168230	0.83[ASN][1000 genomes]
rs4420970	0.89[EUR][1000 genomes]
rs4423865	0.89[EUR][1000 genomes]
rs4599406	0.83[ASN][1000 genomes]
rs4693747	0.89[EUR][1000 genomes]
rs4693748	0.89[EUR][1000 genomes]
rs4693749	0.89[EUR][1000 genomes]
rs62315465	0.89[EUR][1000 genomes]
rs6818942	0.83[ASN][1000 genomes]
rs6820090	0.84[EUR][1000 genomes]
rs6834349	0.88[EUR][1000 genomes]
rs70948760	0.83[ASN][1000 genomes]
rs71599431	0.83[ASN][1000 genomes]
rs71603467	0.83[ASN][1000 genomes]
rs7672187	0.83[ASN][1000 genomes]
rs7684540	0.83[ASN][1000 genomes]
rs7688236	0.83[ASN][1000 genomes]
rs7693916	0.83[ASN][1000 genomes]
rs7695035	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
2	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86760000-86782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86770000-86783600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:86776000-86790400	Weak transcription	Right Atrium	heart
6	chr4:86779600-86783200	Enhancers	HUVEC	blood vessel
7	chr4:86779800-86800200	Weak transcription	Primary B cells from cord blood	blood
8	chr4:86780200-86781800	Enhancers	Fetal Muscle Leg	muscle
9	chr4:86780200-86781800	Enhancers	HSMMtube	muscle
10	chr4:86780200-86781800	Flanking Active TSS	NHDF-Ad	bronchial
11	chr4:86780200-86781800	Enhancers	NHLF	lung
12	chr4:86780200-86782400	Enhancers	Fetal Kidney	kidney
13	chr4:86780400-86787600	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:86780400-86790800	Weak transcription	Gastric	stomach
15	chr4:86780600-86782800	Enhancers	Fetal Brain Female	brain
16	chr4:86780800-86781800	Enhancers	Adipose Nuclei	Adipose
17	chr4:86780800-86781800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr4:86780800-86782000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:86780800-86782000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:86780800-86783000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:86780800-86783200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr4:86780800-86785800	Enhancers	Stomach Mucosa	stomach
23	chr4:86781000-86781800	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr4:86781000-86782200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:86781200-86781800	Flanking Active TSS	Osteobl	bone
26	chr4:86781200-86782200	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr4:86781400-86781800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr4:86781400-86781800	Enhancers	Fetal Brain Male	brain
29	chr4:86781400-86781800	Enhancers	Stomach Smooth Muscle	stomach
30	chr4:86781400-86781800	Enhancers	NH-A	brain
31	chr4:86781400-86782400	Weak transcription	Fetal Stomach	stomach
32	chr4:86781400-86787400	Weak transcription	HSMM	muscle
33	chr4:86781600-86781800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:86781600-86781800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:86781600-86781800	Enhancers	Small Intestine	intestine
36	chr4:86781600-86782000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr4:86781600-86782400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr4:86781600-86782600	Enhancers	Aorta	Aorta
39	chr4:86781600-86782600	Weak transcription	Brain Germinal Matrix	brain
40	chr4:86781600-86782600	Enhancers	A549	lung
41	chr4:86781600-86787600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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