Variant report

Variant	rs17011102
Chromosome Location	chr4:86782978-86782979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10023559	0.83[ASN][1000 genomes]
rs10023650	0.83[ASN][1000 genomes]
rs11721455	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734835	1.00[ASN][1000 genomes]
rs11736203	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931275	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944662	0.83[ASN][1000 genomes]
rs12645494	0.83[ASN][1000 genomes]
rs13123763	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132091	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13134118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134252	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150958	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473010	0.83[ASN][1000 genomes]
rs16996015	1.00[JPT][hapmap]
rs17011041	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs17011082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812330	1.00[ASN][1000 genomes]
rs1812331	1.00[ASN][1000 genomes]
rs2123361	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167715	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175309	0.83[ASN][1000 genomes]
rs2575685	0.83[ASN][1000 genomes]
rs2601841	1.00[ASN][1000 genomes]
rs2601842	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2601850	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs2601853	1.00[CHB][hapmap]
rs2665870	1.00[ASN][1000 genomes]
rs2665874	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345331	0.83[ASN][1000 genomes]
rs345332	0.83[ASN][1000 genomes]
rs345336	0.83[ASN][1000 genomes]
rs345352	1.00[JPT][hapmap]
rs345356	0.83[ASN][1000 genomes]
rs345360	0.83[ASN][1000 genomes]
rs346468	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs346481	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs346511	0.83[ASN][1000 genomes]
rs346512	0.83[ASN][1000 genomes]
rs346514	0.83[ASN][1000 genomes]
rs346515	0.83[ASN][1000 genomes]
rs346519	1.00[ASN][1000 genomes]
rs34836472	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35114569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35852536	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35900112	0.83[ASN][1000 genomes]
rs35941601	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36168230	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147415	0.83[ASN][1000 genomes]
rs4599406	1.00[ASN][1000 genomes]
rs4693750	0.83[ASN][1000 genomes]
rs6531879	0.83[ASN][1000 genomes]
rs6531880	0.83[ASN][1000 genomes]
rs6818942	1.00[ASN][1000 genomes]
rs70948760	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71599431	1.00[ASN][1000 genomes]
rs71603467	1.00[ASN][1000 genomes]
rs73833936	0.85[AFR][1000 genomes]
rs73833938	0.85[AFR][1000 genomes]
rs73833941	0.85[AFR][1000 genomes]
rs7672187	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684201	0.83[ASN][1000 genomes]
rs7684540	1.00[ASN][1000 genomes]
rs7685869	0.83[ASN][1000 genomes]
rs7688236	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs7693916	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];1.00[ASN][1000 genomes]
rs7695035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
2	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86770000-86783600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:86776000-86790400	Weak transcription	Right Atrium	heart
5	chr4:86779600-86783200	Enhancers	HUVEC	blood vessel
6	chr4:86779800-86800200	Weak transcription	Primary B cells from cord blood	blood
7	chr4:86780400-86787600	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:86780400-86790800	Weak transcription	Gastric	stomach
9	chr4:86780800-86783000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:86780800-86783200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:86780800-86785800	Enhancers	Stomach Mucosa	stomach
12	chr4:86781400-86787400	Weak transcription	HSMM	muscle
13	chr4:86781600-86787600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:86781800-86783800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86781800-86787200	Weak transcription	HSMMtube	muscle
16	chr4:86781800-86787400	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:86781800-86787400	Enhancers	NHDF-Ad	bronchial
18	chr4:86781800-86787600	Weak transcription	NHLF	lung
19	chr4:86781800-86787800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:86781800-86789000	Weak transcription	Small Intestine	intestine
21	chr4:86781800-86790400	Weak transcription	NH-A	brain
22	chr4:86782000-86783200	Enhancers	Fetal Brain Male	brain
23	chr4:86782000-86783400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr4:86782000-86785200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:86782000-86787000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:86782400-86783000	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr4:86782400-86783400	Enhancers	Fetal Stomach	stomach
28	chr4:86782400-86788400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:86782600-86783400	Enhancers	Brain Germinal Matrix	brain
30	chr4:86782600-86783600	Enhancers	Primary hematopoietic stem cells	blood
31	chr4:86782600-86787400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:86782600-86787400	Weak transcription	Aorta	Aorta
33	chr4:86782600-86787600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr4:86782800-86783000	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr4:86782800-86783400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:86782800-86783600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:86782800-86783600	Weak transcription	Fetal Lung	lung
38	chr4:86782800-86785400	Enhancers	Fetal Kidney	kidney
39	chr4:86782800-86787000	Weak transcription	Osteobl	bone
40	chr4:86782800-86791600	Weak transcription	Duodenum Mucosa	Duodenum

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