Variant report

Variant	rs73833938
Chromosome Location	chr4:86782240-86782241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11724703	0.85[AFR][1000 genomes]
rs13134118	0.85[AFR][1000 genomes]
rs17011082	0.85[AFR][1000 genomes]
rs17011102	0.85[AFR][1000 genomes]
rs35114569	0.85[AFR][1000 genomes]
rs73833936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7672187	0.85[AFR][1000 genomes]
rs7695035	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
2	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86760000-86782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86770000-86783600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:86776000-86790400	Weak transcription	Right Atrium	heart
6	chr4:86779600-86783200	Enhancers	HUVEC	blood vessel
7	chr4:86779800-86800200	Weak transcription	Primary B cells from cord blood	blood
8	chr4:86780200-86782400	Enhancers	Fetal Kidney	kidney
9	chr4:86780400-86787600	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:86780400-86790800	Weak transcription	Gastric	stomach
11	chr4:86780600-86782800	Enhancers	Fetal Brain Female	brain
12	chr4:86780800-86783000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:86780800-86783200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:86780800-86785800	Enhancers	Stomach Mucosa	stomach
15	chr4:86781400-86782400	Weak transcription	Fetal Stomach	stomach
16	chr4:86781400-86787400	Weak transcription	HSMM	muscle
17	chr4:86781600-86782400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:86781600-86782600	Enhancers	Aorta	Aorta
19	chr4:86781600-86782600	Weak transcription	Brain Germinal Matrix	brain
20	chr4:86781600-86782600	Enhancers	A549	lung
21	chr4:86781600-86787600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:86781800-86782800	Enhancers	Osteobl	bone
23	chr4:86781800-86783800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:86781800-86787200	Weak transcription	HSMMtube	muscle
25	chr4:86781800-86787400	Weak transcription	Fetal Muscle Leg	muscle
26	chr4:86781800-86787400	Enhancers	NHDF-Ad	bronchial
27	chr4:86781800-86787600	Weak transcription	NHLF	lung
28	chr4:86781800-86787800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:86781800-86789000	Weak transcription	Small Intestine	intestine
30	chr4:86781800-86790400	Weak transcription	NH-A	brain
31	chr4:86782000-86782400	Enhancers	Stomach Smooth Muscle	stomach
32	chr4:86782000-86782800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:86782000-86783200	Enhancers	Fetal Brain Male	brain
34	chr4:86782000-86783400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr4:86782000-86785200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:86782000-86787000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:86782200-86782600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:86782200-86782600	Enhancers	Fetal Intestine Large	intestine
39	chr4:86782200-86782600	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr4:86782200-86782800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr4:86782200-86782800	Enhancers	Fetal Lung	lung

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