Variant report

Variant	rs17011082
Chromosome Location	chr4:86775637-86775638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10023559	0.83[ASN][1000 genomes]
rs10023650	0.83[ASN][1000 genomes]
rs11721455	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734835	1.00[ASN][1000 genomes]
rs11736203	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931275	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944662	0.83[ASN][1000 genomes]
rs12645494	0.83[ASN][1000 genomes]
rs13123763	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132091	1.00[ASN][1000 genomes]
rs13134118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134252	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150958	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473010	0.83[ASN][1000 genomes]
rs17011102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812330	1.00[ASN][1000 genomes]
rs1812331	1.00[ASN][1000 genomes]
rs2123361	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167715	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175309	0.83[ASN][1000 genomes]
rs2575685	0.83[ASN][1000 genomes]
rs2601841	1.00[ASN][1000 genomes]
rs2601842	1.00[ASN][1000 genomes]
rs2601850	1.00[ASN][1000 genomes]
rs2665870	1.00[ASN][1000 genomes]
rs2665874	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345331	0.83[ASN][1000 genomes]
rs345332	0.83[ASN][1000 genomes]
rs345336	0.83[ASN][1000 genomes]
rs345356	0.83[ASN][1000 genomes]
rs345360	0.83[ASN][1000 genomes]
rs346468	1.00[ASN][1000 genomes]
rs346481	1.00[ASN][1000 genomes]
rs346511	0.83[ASN][1000 genomes]
rs346512	0.83[ASN][1000 genomes]
rs346514	0.83[ASN][1000 genomes]
rs346515	0.83[ASN][1000 genomes]
rs346519	1.00[ASN][1000 genomes]
rs34836472	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35114569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35852536	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35900112	0.83[ASN][1000 genomes]
rs35941601	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36168230	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147415	0.83[ASN][1000 genomes]
rs4599406	1.00[ASN][1000 genomes]
rs4693750	0.83[ASN][1000 genomes]
rs6531879	0.83[ASN][1000 genomes]
rs6531880	0.83[ASN][1000 genomes]
rs6818942	1.00[ASN][1000 genomes]
rs70948760	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71599431	1.00[ASN][1000 genomes]
rs71603467	1.00[ASN][1000 genomes]
rs73833936	0.85[AFR][1000 genomes]
rs73833938	0.85[AFR][1000 genomes]
rs73833941	0.85[AFR][1000 genomes]
rs7672187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684201	0.83[ASN][1000 genomes]
rs7684540	1.00[ASN][1000 genomes]
rs7685869	0.83[ASN][1000 genomes]
rs7688236	1.00[ASN][1000 genomes]
rs7693916	1.00[ASN][1000 genomes]
rs7695035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv470049	chr4:86750699-86776488	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
2	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86760000-86782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86761800-86778800	Weak transcription	Fetal Lung	lung
5	chr4:86764000-86780800	Weak transcription	Adipose Nuclei	Adipose
6	chr4:86764200-86775800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:86764400-86778200	Weak transcription	Primary B cells from cord blood	blood
8	chr4:86770000-86783600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:86774400-86780200	Weak transcription	Fetal Brain Male	brain
10	chr4:86774600-86780200	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:86774800-86775800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:86775000-86776200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:86775200-86776000	Weak transcription	Left Ventricle	heart
14	chr4:86775400-86776600	Genic enhancers	HUVEC	blood vessel
15	chr4:86775600-86776000	Enhancers	HSMM	muscle
16	chr4:86775600-86776200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:86775600-86776200	Enhancers	Fetal Heart	heart
18	chr4:86775600-86776400	Enhancers	HSMMtube	muscle

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