Variant report

Variant	rs7684201
Chromosome Location	chr4:86835194-86835195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10023559	0.96[CEU][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023650	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721455	0.83[ASN][1000 genomes]
rs11724703	0.83[ASN][1000 genomes]
rs11734835	0.83[ASN][1000 genomes]
rs11736203	0.83[ASN][1000 genomes]
rs11931275	0.83[ASN][1000 genomes]
rs11944662	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645494	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115144	0.89[EUR][1000 genomes]
rs13123763	0.83[ASN][1000 genomes]
rs13132091	0.83[ASN][1000 genomes]
rs13134118	0.83[ASN][1000 genomes]
rs13134252	0.83[ASN][1000 genomes]
rs13150958	0.83[ASN][1000 genomes]
rs1473010	1.00[CEU][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011082	0.83[ASN][1000 genomes]
rs17011102	0.83[ASN][1000 genomes]
rs1812330	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1812331	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2008488	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2123361	0.83[ASN][1000 genomes]
rs2167715	0.83[ASN][1000 genomes]
rs2175309	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2575685	1.00[CEU][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2601841	0.83[ASN][1000 genomes]
rs2601842	0.83[ASN][1000 genomes]
rs2601850	0.83[ASN][1000 genomes]
rs2665870	0.83[ASN][1000 genomes]
rs2665874	0.83[ASN][1000 genomes]
rs346468	0.83[ASN][1000 genomes]
rs346481	0.83[ASN][1000 genomes]
rs346511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346514	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346515	1.00[CEU][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346519	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34836472	0.83[ASN][1000 genomes]
rs35114569	0.83[ASN][1000 genomes]
rs35852536	0.83[ASN][1000 genomes]
rs35900112	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35941601	0.83[ASN][1000 genomes]
rs36168230	0.83[ASN][1000 genomes]
rs4147415	1.00[CEU][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4599406	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4693750	1.00[CEU][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531879	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531880	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818942	0.83[ASN][1000 genomes]
rs6842979	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs70948760	0.83[ASN][1000 genomes]
rs71599431	0.83[ASN][1000 genomes]
rs71603467	0.83[ASN][1000 genomes]
rs7672187	0.83[ASN][1000 genomes]
rs7684540	0.83[ASN][1000 genomes]
rs7685869	1.00[CEU][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688236	0.83[ASN][1000 genomes]
rs7693916	0.83[ASN][1000 genomes]
rs7695035	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
4	chr4:86815800-86842800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:86826800-86845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:86827600-86835400	Weak transcription	Small Intestine	intestine
7	chr4:86827600-86850600	Weak transcription	Spleen	Spleen
8	chr4:86829600-86843800	Weak transcription	Primary B cells from cord blood	blood
9	chr4:86831200-86851000	Weak transcription	Aorta	Aorta
10	chr4:86832400-86842800	Weak transcription	Pancreas	Pancrea
11	chr4:86832400-86843800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr4:86834000-86836200	Enhancers	Fetal Intestine Large	intestine
13	chr4:86834200-86835600	Enhancers	Stomach Mucosa	stomach
14	chr4:86834200-86836000	Enhancers	Fetal Intestine Small	intestine
15	chr4:86834200-86836400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr4:86834400-86836000	Enhancers	Fetal Kidney	kidney
17	chr4:86834600-86836200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr4:86834600-86841000	Weak transcription	A549	lung
19	chr4:86834800-86836000	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links