Variant report

Variant	rs11931275
Chromosome Location	chr4:86791384-86791385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10023559	0.83[ASN][1000 genomes]
rs10023650	0.83[ASN][1000 genomes]
rs11721455	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724703	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734835	1.00[ASN][1000 genomes]
rs11736203	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944662	0.83[ASN][1000 genomes]
rs12645494	0.83[ASN][1000 genomes]
rs13123763	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132091	1.00[ASN][1000 genomes]
rs13134118	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134252	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150958	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473010	0.83[ASN][1000 genomes]
rs17011082	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011102	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812330	1.00[ASN][1000 genomes]
rs1812331	1.00[ASN][1000 genomes]
rs2123361	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167715	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175309	0.83[ASN][1000 genomes]
rs2575685	0.83[ASN][1000 genomes]
rs2601841	1.00[ASN][1000 genomes]
rs2601842	1.00[ASN][1000 genomes]
rs2601850	1.00[ASN][1000 genomes]
rs2665870	1.00[ASN][1000 genomes]
rs2665874	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345331	0.83[ASN][1000 genomes]
rs345332	0.83[ASN][1000 genomes]
rs345336	0.83[ASN][1000 genomes]
rs345356	0.83[ASN][1000 genomes]
rs345360	0.83[ASN][1000 genomes]
rs346468	1.00[ASN][1000 genomes]
rs346481	1.00[ASN][1000 genomes]
rs346511	0.83[ASN][1000 genomes]
rs346512	0.83[ASN][1000 genomes]
rs346514	0.83[ASN][1000 genomes]
rs346515	0.83[ASN][1000 genomes]
rs346519	1.00[ASN][1000 genomes]
rs34836472	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35114569	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35852536	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35900112	0.83[ASN][1000 genomes]
rs35941601	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36168230	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147415	0.83[ASN][1000 genomes]
rs4599406	1.00[ASN][1000 genomes]
rs4693750	0.83[ASN][1000 genomes]
rs6531879	0.83[ASN][1000 genomes]
rs6531880	0.83[ASN][1000 genomes]
rs6818942	1.00[ASN][1000 genomes]
rs70948760	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71599431	1.00[ASN][1000 genomes]
rs71603467	1.00[ASN][1000 genomes]
rs7672187	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684201	0.83[ASN][1000 genomes]
rs7684540	1.00[ASN][1000 genomes]
rs7685869	0.83[ASN][1000 genomes]
rs7688236	1.00[ASN][1000 genomes]
rs7693916	1.00[ASN][1000 genomes]
rs7695035	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86779800-86800200	Weak transcription	Primary B cells from cord blood	blood
3	chr4:86782800-86791600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:86788000-86792200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:86788000-86792600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:86788000-86793800	Weak transcription	Pancreas	Pancrea
7	chr4:86788000-86794200	Weak transcription	Psoas Muscle	Psoas
8	chr4:86788000-86795400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:86788000-86795400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:86788000-86797000	Weak transcription	Ovary	ovary
11	chr4:86788000-86804000	Weak transcription	Aorta	Aorta
12	chr4:86788000-86807400	Weak transcription	Left Ventricle	heart
13	chr4:86788000-86810800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr4:86788000-86812400	Weak transcription	HSMM	muscle
15	chr4:86788200-86791600	Enhancers	NHDF-Ad	bronchial
16	chr4:86788200-86812000	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:86788400-86794200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:86788600-86794600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:86789200-86791800	Enhancers	Stomach Mucosa	stomach
20	chr4:86789400-86791600	Enhancers	Fetal Kidney	kidney
21	chr4:86790600-86792800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:86791000-86803600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:86791000-86804200	Weak transcription	HSMMtube	muscle
25	chr4:86791200-86792600	Weak transcription	HUVEC	blood vessel
26	chr4:86791200-86795600	Weak transcription	Small Intestine	intestine
27	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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