Variant report

Variant	rs73833936
Chromosome Location	chr4:86780704-86780705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11724703	0.85[AFR][1000 genomes]
rs13134118	0.85[AFR][1000 genomes]
rs17011082	0.85[AFR][1000 genomes]
rs17011102	0.85[AFR][1000 genomes]
rs35114569	0.85[AFR][1000 genomes]
rs73833938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7672187	0.85[AFR][1000 genomes]
rs7695035	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
2	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86760000-86782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86764000-86780800	Weak transcription	Adipose Nuclei	Adipose
5	chr4:86770000-86783600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr4:86776000-86790400	Weak transcription	Right Atrium	heart
7	chr4:86776200-86780800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:86776200-86780800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:86776200-86780800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:86776200-86780800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:86779400-86780800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:86779600-86783200	Enhancers	HUVEC	blood vessel
13	chr4:86779800-86800200	Weak transcription	Primary B cells from cord blood	blood
14	chr4:86780000-86781200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:86780200-86781000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:86780200-86781200	Enhancers	Osteobl	bone
17	chr4:86780200-86781400	Enhancers	Fetal Heart	heart
18	chr4:86780200-86781400	Enhancers	HSMM	muscle
19	chr4:86780200-86781600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr4:86780200-86781800	Enhancers	Fetal Muscle Leg	muscle
21	chr4:86780200-86781800	Enhancers	HSMMtube	muscle
22	chr4:86780200-86781800	Flanking Active TSS	NHDF-Ad	bronchial
23	chr4:86780200-86781800	Enhancers	NHLF	lung
24	chr4:86780200-86782400	Enhancers	Fetal Kidney	kidney
25	chr4:86780400-86781000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:86780400-86787600	Weak transcription	Colon Smooth Muscle	Colon
27	chr4:86780400-86790800	Weak transcription	Gastric	stomach
28	chr4:86780600-86781200	Enhancers	A549	lung
29	chr4:86780600-86781400	Weak transcription	Fetal Brain Male	brain
30	chr4:86780600-86782800	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links