Variant report

Variant	rs34546986
Chromosome Location	chr6:28362309-28362310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28186853..28189269-chr6:28360764..28363379,2	K562	blood:
2	chr6:28332159..28333981-chr6:28361643..28364361,2	K562	blood:
3	chr6:28359897..28362506-chr6:28613582..28616883,3	K562	blood:
4	chr6:28361885..28364070-chr6:28448691..28451219,2	K562	blood:
5	chr6:28321911..28323574-chr6:28361622..28363412,2	K562	blood:

Variant related genes	Relation type
ENSG00000272278	Chromatin interaction
ENSG00000235570	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs13190888	0.84[EUR][1000 genomes]
rs13191038	0.89[EUR][1000 genomes]
rs13191786	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13195291	0.89[EUR][1000 genomes]
rs13197633	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13198809	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13201308	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13201681	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13204012	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13205211	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13205911	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13207345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13208096	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13211507	0.89[EUR][1000 genomes]
rs13213152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13213986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13214023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13217619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13217984	0.82[EUR][1000 genomes]
rs2232423	1.00[EUR][1000 genomes]
rs2232426	1.00[EUR][1000 genomes]
rs2232429	1.00[EUR][1000 genomes]
rs33932084	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34218844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34243448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34396849	0.89[EUR][1000 genomes]
rs34505829	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34661125	0.89[EUR][1000 genomes]
rs34676049	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34691223	0.89[EUR][1000 genomes]
rs34765154	0.82[EUR][1000 genomes]
rs34832585	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34871267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34878803	0.89[EUR][1000 genomes]
rs34950484	0.89[EUR][1000 genomes]
rs35001169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35016036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35017208	0.96[EUR][1000 genomes]
rs35030260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35072899	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35098436	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35353359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35656932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35744819	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35781323	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35883476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36092177	1.00[EUR][1000 genomes]
rs4947336	0.84[EUR][1000 genomes]
rs55690788	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56075693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56189111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67340775	0.91[EUR][1000 genomes]
rs67381177	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67981811	1.00[EUR][1000 genomes]
rs67998226	0.89[EUR][1000 genomes]
rs72846794	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72854513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs34546986	AL022393.7	cis	Muscle Skeletal	GTEx
rs34546986	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs34546986	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs34546986	ZFP57	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28351600-28364600	Weak transcription	Right Atrium	heart
2	chr6:28352200-28365800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:28352600-28362600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:28352600-28364200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:28352600-28364400	Strong transcription	Fetal Thymus	thymus
6	chr6:28352600-28364600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:28352600-28365400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:28352600-28365800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:28353000-28364800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:28354000-28364600	Strong transcription	Fetal Muscle Leg	muscle
11	chr6:28354200-28365600	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr6:28354400-28364800	Strong transcription	Fetal Stomach	stomach
13	chr6:28354800-28363800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr6:28355800-28364800	Weak transcription	Fetal Intestine Small	intestine
15	chr6:28356400-28362600	Strong transcription	Stomach Smooth Muscle	stomach
16	chr6:28356600-28363000	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:28358600-28364200	Weak transcription	Stomach Mucosa	stomach
18	chr6:28358600-28365000	Weak transcription	Fetal Heart	heart
19	chr6:28359000-28364600	Weak transcription	NHEK	skin
20	chr6:28359200-28365000	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:28359200-28366000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:28359200-28366200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:28359200-28366600	Weak transcription	Right Ventricle	heart
24	chr6:28359400-28363800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:28359400-28364400	Weak transcription	Pancreas	Pancrea
26	chr6:28359400-28364400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:28359400-28364400	Weak transcription	NHDF-Ad	bronchial
28	chr6:28359400-28364600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr6:28359400-28364800	Weak transcription	Esophagus	oesophagus
30	chr6:28359400-28365800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr6:28359400-28365800	Weak transcription	Gastric	stomach
32	chr6:28359400-28365800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:28359400-28365800	Weak transcription	Small Intestine	intestine
34	chr6:28359400-28366000	Weak transcription	HSMMtube	muscle
35	chr6:28359400-28366600	Weak transcription	Psoas Muscle	Psoas
36	chr6:28359400-28366800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:28359600-28363200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:28359600-28366800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:28359800-28366800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr6:28359800-28366800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:28360600-28364800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:28360800-28362600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr6:28360800-28363800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr6:28360800-28364000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:28360800-28364000	Weak transcription	Thymus	Thymus
46	chr6:28360800-28364600	Weak transcription	Spleen	Spleen
47	chr6:28360800-28365200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:28360800-28365800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:28360800-28366000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:28360800-28366600	Weak transcription	Colonic Mucosa	Colon

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