Variant report

Variant	rs34832585
Chromosome Location	chr6:28150878-28150879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28128462..28132189-chr6:28149353..28151686,3	K562	blood:
2	chr6:28144649..28146793-chr6:28148487..28151313,2	K562	blood:
3	chr6:28145293..28147306-chr6:28149320..28151313,2	K562	blood:
4	chr6:28146868..28149346-chr6:28150403..28152659,2	K562	blood:

Variant related genes	Relation type
ENSG00000226314	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs13190888	0.81[EUR][1000 genomes]
rs13191786	0.85[EUR][1000 genomes]
rs13195291	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13197176	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13197574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13197633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13198809	0.85[EUR][1000 genomes]
rs13200214	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13201308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13201681	0.85[EUR][1000 genomes]
rs13203816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13204012	0.85[EUR][1000 genomes]
rs13205211	0.85[EUR][1000 genomes]
rs13205911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13207345	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13208096	0.85[EUR][1000 genomes]
rs13211507	0.85[EUR][1000 genomes]
rs13213152	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13213986	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13214023	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13217619	1.00[AFR][1000 genomes]
rs13217984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2232423	0.82[EUR][1000 genomes]
rs2232426	0.82[EUR][1000 genomes]
rs2232429	0.82[EUR][1000 genomes]
rs33932084	0.84[EUR][1000 genomes]
rs34166054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34218844	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34243448	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34371502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34396849	0.85[EUR][1000 genomes]
rs34505829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34546986	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34588114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34661125	0.85[EUR][1000 genomes]
rs34662244	0.82[EUR][1000 genomes]
rs34691223	0.85[EUR][1000 genomes]
rs34765154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34871267	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34878803	0.85[EUR][1000 genomes]
rs34950484	0.85[EUR][1000 genomes]
rs35001169	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35016036	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35017208	0.85[EUR][1000 genomes]
rs35030260	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35072899	0.85[EUR][1000 genomes]
rs35098436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35345226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35353359	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35656932	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35744819	0.85[EUR][1000 genomes]
rs35749575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35781323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35883476	0.82[EUR][1000 genomes]
rs35902873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35952432	0.90[EUR][1000 genomes]
rs36092177	0.82[EUR][1000 genomes]
rs56075693	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56189111	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs66886492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67297533	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67340775	0.84[EUR][1000 genomes]
rs67981811	0.82[EUR][1000 genomes]
rs67998226	0.85[EUR][1000 genomes]
rs68188794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71537572	1.00[AFR][1000 genomes]
rs71559070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71559072	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72854513	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs34832585	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs34832585	ZFP57	Cis_chr	lymphoblastoid	RTeQTL
rs34832585	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs34832585	AL022393.7	cis	Muscle Skeletal	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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