Variant report

Variant	rs35749575
Chromosome Location	chr6:28114818-28114819
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28101303..28102850-chr6:28114083..28116185,2	MCF-7	breast:
2	chr6:28114023..28116514-chr6:28140821..28142686,2	K562	blood:
3	chr6:28114623..28117122-chr6:28187567..28190304,2	K562	blood:
4	chr6:28108554..28111385-chr6:28111459..28116285,4	MCF-7	breast:
5	chr6:28113361..28114931-chr6:28160000..28161674,2	MCF-7	breast:
6	chr6:28114111..28116843-chr6:28370427..28372870,2	K562	blood:
7	chr6:27861044..27862748-chr6:28114631..28116226,2	K562	blood:

Variant related genes	Relation type
ENSG00000198315	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs13190888	0.81[EUR][1000 genomes]
rs13191786	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13195291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13197176	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13197574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13197633	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13198809	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13200214	0.84[EUR][1000 genomes]
rs13201308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13203816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13204012	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13205211	0.85[EUR][1000 genomes]
rs13205911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13207345	0.85[EUR][1000 genomes]
rs13208096	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13211507	0.85[EUR][1000 genomes]
rs13213152	0.85[EUR][1000 genomes]
rs13214023	0.85[EUR][1000 genomes]
rs13217984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs33932084	0.84[EUR][1000 genomes]
rs34166054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34218844	0.85[EUR][1000 genomes]
rs34243448	0.85[EUR][1000 genomes]
rs34371502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34396849	0.85[EUR][1000 genomes]
rs34505829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34588114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34661125	0.85[EUR][1000 genomes]
rs34662244	0.82[EUR][1000 genomes]
rs34691223	0.85[EUR][1000 genomes]
rs34765154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34832585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34878803	0.85[EUR][1000 genomes]
rs34950484	0.85[EUR][1000 genomes]
rs35001169	0.93[EUR][1000 genomes]
rs35016036	0.82[EUR][1000 genomes]
rs35017208	0.85[EUR][1000 genomes]
rs35030260	0.84[EUR][1000 genomes]
rs35072899	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35098436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35345226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35353359	0.85[EUR][1000 genomes]
rs35656932	0.93[EUR][1000 genomes]
rs35744819	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35781323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35902873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35952432	0.90[EUR][1000 genomes]
rs56075693	0.85[EUR][1000 genomes]
rs56189111	0.85[EUR][1000 genomes]
rs66886492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67297533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67340775	0.84[EUR][1000 genomes]
rs67998226	0.85[EUR][1000 genomes]
rs68188794	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71559070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71559072	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72846794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72854513	0.85[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs35749575	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs35749575	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs35749575	ZFP57	Cis_chr	lymphoblastoid	RTeQTL
rs35749575	AL022393.7	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28110000-28116200	Weak transcription	Spleen	Spleen
2	chr6:28110200-28115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:28110200-28115800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:28110200-28116000	Weak transcription	Lung	lung
5	chr6:28110200-28116200	Weak transcription	Esophagus	oesophagus
6	chr6:28110200-28116200	Weak transcription	Gastric	stomach
7	chr6:28110200-28116200	Weak transcription	Pancreas	Pancrea
8	chr6:28110200-28116200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:28110200-28120800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:28110600-28115600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:28110600-28115800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:28110600-28115800	Weak transcription	Left Ventricle	heart
13	chr6:28110600-28115800	Weak transcription	Thymus	Thymus
14	chr6:28110600-28116000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:28110600-28116000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:28110800-28115600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:28111000-28115400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:28111000-28115800	Weak transcription	Fetal Stomach	stomach
19	chr6:28111000-28116000	Weak transcription	HMEC	breast
20	chr6:28111000-28120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:28111200-28115200	Weak transcription	Fetal Brain Female	brain
22	chr6:28111200-28115400	Weak transcription	NHLF	lung
23	chr6:28111200-28115600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:28111200-28115600	Weak transcription	Colonic Mucosa	Colon
25	chr6:28111200-28115600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:28111200-28115800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:28111200-28115800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:28111200-28115800	Weak transcription	Brain Angular Gyrus	brain
29	chr6:28111200-28116200	Weak transcription	Brain Anterior Caudate	brain
30	chr6:28111200-28116200	Weak transcription	Brain Substantia Nigra	brain
31	chr6:28111200-28116200	Weak transcription	Right Ventricle	heart
32	chr6:28111200-28116600	Weak transcription	Fetal Heart	heart
33	chr6:28111200-28119400	Weak transcription	Stomach Mucosa	stomach
34	chr6:28111200-28119600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:28111400-28115400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:28111400-28115600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:28111400-28115600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:28111400-28115800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:28111400-28115800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:28111400-28116000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:28111400-28116000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:28111400-28116200	Weak transcription	Fetal Intestine Small	intestine
43	chr6:28111400-28116400	Weak transcription	Small Intestine	intestine
44	chr6:28111400-28117200	Weak transcription	Psoas Muscle	Psoas
45	chr6:28111400-28119400	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:28111400-28129200	Weak transcription	Right Atrium	heart
47	chr6:28111600-28121000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:28111800-28118000	Strong transcription	A549	lung
49	chr6:28111800-28119400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:28111800-28119600	Strong transcription	HSMM	muscle

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