Variant report

Variant	rs67297533
Chromosome Location	chr6:28141253-28141254
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28114023..28116514-chr6:28140821..28142686,2	K562	blood:
2	chr6:28140632..28142343-chr6:28159813..28161834,2	K562	blood:
3	chr6:28139929..28141962-chr6:28142332..28144610,2	K562	blood:
4	chr6:28141218..28142737-chr6:28303339..28305763,2	K562	blood:
5	chr6:28139078..28141804-chr6:28165060..28166721,2	K562	blood:
6	chr6:27858835..27861043-chr6:28141226..28144128,2	K562	blood:

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000216901	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs13191786	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13195291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13197176	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13197574	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13197633	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13198809	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13200214	0.81[EUR][1000 genomes]
rs13201308	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13203816	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13204012	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13205211	0.82[EUR][1000 genomes]
rs13205911	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13207345	0.82[EUR][1000 genomes]
rs13208096	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13211507	0.82[EUR][1000 genomes]
rs13213152	0.82[EUR][1000 genomes]
rs13214023	0.82[EUR][1000 genomes]
rs13217984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs33932084	0.81[EUR][1000 genomes]
rs34166054	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34218844	0.82[EUR][1000 genomes]
rs34243448	0.82[EUR][1000 genomes]
rs34371502	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34396849	0.82[EUR][1000 genomes]
rs34505829	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34588114	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34661125	0.82[EUR][1000 genomes]
rs34662244	0.85[EUR][1000 genomes]
rs34691223	0.82[EUR][1000 genomes]
rs34765154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34832585	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34878803	0.82[EUR][1000 genomes]
rs34950484	0.82[EUR][1000 genomes]
rs35001169	0.89[EUR][1000 genomes]
rs35017208	0.82[EUR][1000 genomes]
rs35030260	0.80[EUR][1000 genomes]
rs35072899	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35098436	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35345226	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35353359	0.82[EUR][1000 genomes]
rs35656932	0.89[EUR][1000 genomes]
rs35744819	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35749575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35781323	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35883476	1.00[AFR][1000 genomes]
rs35902873	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35952432	0.86[EUR][1000 genomes]
rs56075693	0.82[EUR][1000 genomes]
rs56189111	0.82[EUR][1000 genomes]
rs66886492	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67340775	0.80[EUR][1000 genomes]
rs67998226	0.82[EUR][1000 genomes]
rs68188794	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71559070	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71559072	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72846780	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72846794	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72854513	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs67297533	AL022393.7	cis	Muscle Skeletal	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28129800-28142200	Weak transcription	Aorta	Aorta
2	chr6:28129800-28145400	Weak transcription	Brain Angular Gyrus	brain
3	chr6:28130000-28141400	Weak transcription	Right Ventricle	heart
4	chr6:28130000-28142600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:28130200-28141800	Weak transcription	Fetal Kidney	kidney
6	chr6:28130200-28142800	Weak transcription	Left Ventricle	heart
7	chr6:28130400-28142600	Weak transcription	Psoas Muscle	Psoas
8	chr6:28130600-28141800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:28135800-28141600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:28138000-28145600	Weak transcription	K562	blood
11	chr6:28139000-28144400	Weak transcription	Brain Anterior Caudate	brain
12	chr6:28139400-28141800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:28139400-28145600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:28140200-28142400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:28140800-28142400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:28141000-28143200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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