Variant report

Variant	rs35883476
Chromosome Location	chr6:28368508-28368509
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28366385..28368709-chr6:28493666..28495776,2	K562	blood:
2	chr6:28315597..28319153-chr6:28366055..28369015,3	K562	blood:
3	chr6:28364231..28371937-chr6:28372195..28378158,17	K562	blood:
4	chr6:28367674..28369905-chr6:28510832..28512890,2	K562	blood:
5	chr6:28366682..28368772-chr6:28423873..28426480,2	K562	blood:
6	chr6:28302165..28304933-chr6:28366158..28368845,2	K562	blood:
7	chr6:28225119..28227553-chr6:28366156..28368716,2	K562	blood:
8	chr6:28103668..28105670-chr6:28367426..28369293,3	K562	blood:
9	chr6:28044681..28046793-chr6:28367579..28369114,2	K562	blood:
10	chr6:28366328..28369247-chr6:28582607..28584582,2	K562	blood:
11	chr6:28191542..28194803-chr6:28365970..28368645,4	K562	blood:
12	chr6:28109524..28111212-chr6:28366058..28368601,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000219262	Chromatin interaction
ENSG00000189134	Chromatin interaction
ENSG00000269293	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000224586	Chromatin interaction
ENSG00000232040	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000251877	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000198315	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs13190888	0.84[EUR][1000 genomes]
rs13191038	0.89[EUR][1000 genomes]
rs13191786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13195291	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13197633	0.89[EUR][1000 genomes]
rs13198809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13201308	0.82[EUR][1000 genomes]
rs13201681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13204012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13205211	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13207345	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13208096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13211507	0.89[EUR][1000 genomes]
rs13213152	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13213986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13214023	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13217619	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13217984	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2232423	1.00[EUR][1000 genomes]
rs2232426	1.00[EUR][1000 genomes]
rs2232429	1.00[EUR][1000 genomes]
rs33932084	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34218844	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34243448	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34396849	0.89[EUR][1000 genomes]
rs34505829	0.82[EUR][1000 genomes]
rs34546986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34661125	0.89[EUR][1000 genomes]
rs34676049	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34691223	0.89[EUR][1000 genomes]
rs34765154	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34832585	0.82[EUR][1000 genomes]
rs34871267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34878803	0.89[EUR][1000 genomes]
rs34950484	0.89[EUR][1000 genomes]
rs35001169	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35016036	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35017208	0.96[EUR][1000 genomes]
rs35030260	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35072899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35098436	0.82[EUR][1000 genomes]
rs35353359	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35656932	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35744819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35781323	0.82[EUR][1000 genomes]
rs36092177	1.00[EUR][1000 genomes]
rs4947336	0.84[EUR][1000 genomes]
rs55690788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56075693	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56189111	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67297533	1.00[AFR][1000 genomes]
rs67340775	0.91[EUR][1000 genomes]
rs67381177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67981811	1.00[EUR][1000 genomes]
rs67998226	0.89[EUR][1000 genomes]
rs72846794	0.82[EUR][1000 genomes]
rs72854513	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs35883476	ZFP57	Cis_chr	lymphoblastoid	RTeQTL
rs35883476	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs35883476	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs35883476	AL022393.7	cis	Muscle Skeletal	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28366800-28368600	Active TSS	Aorta	Aorta
2	chr6:28368000-28370800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:28368200-28368600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:28368200-28368600	Flanking Active TSS	GM12878-XiMat	blood
5	chr6:28368200-28368600	Flanking Active TSS	K562	blood
6	chr6:28368200-28369000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:28368200-28369000	Enhancers	NHEK	skin
8	chr6:28368200-28369400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:28368400-28368600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr6:28368400-28368600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr6:28368400-28368600	Bivalent Enhancer	Primary B cells from cord blood	blood
12	chr6:28368400-28368600	Enhancers	Dnd41	blood
13	chr6:28368400-28368600	Enhancers	HepG2	liver
14	chr6:28368400-28368800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:28368400-28369600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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