Variant report

Variant	rs34871267
Chromosome Location	chr6:28364232-28364233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28364231..28371937-chr6:28372195..28378158,17	K562	blood:
2	chr6:28302194..28303885-chr6:28363135..28365627,2	K562	blood:
3	chr6:28332159..28333981-chr6:28361643..28364361,2	K562	blood:
4	chr6:28302488..28304802-chr6:28363245..28366006,2	K562	blood:
5	chr6:28109361..28111458-chr6:28362788..28366324,4	K562	blood:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction
ENSG00000251877	Chromatin interaction
ENSG00000198315	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs13190888	0.84[EUR][1000 genomes]
rs13191038	0.89[EUR][1000 genomes]
rs13191786	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13195291	0.89[EUR][1000 genomes]
rs13197633	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13198809	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13201308	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13201681	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13204012	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13205211	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13207345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13208096	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13211507	0.89[EUR][1000 genomes]
rs13213152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13213986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13214023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13217619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13217984	0.82[EUR][1000 genomes]
rs2232423	1.00[EUR][1000 genomes]
rs2232426	1.00[EUR][1000 genomes]
rs2232429	1.00[EUR][1000 genomes]
rs33932084	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34218844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34243448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34396849	0.89[EUR][1000 genomes]
rs34505829	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34546986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34661125	0.89[EUR][1000 genomes]
rs34676049	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34691223	0.89[EUR][1000 genomes]
rs34765154	0.82[EUR][1000 genomes]
rs34832585	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34878803	0.89[EUR][1000 genomes]
rs34950484	0.89[EUR][1000 genomes]
rs35001169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35016036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35017208	0.96[EUR][1000 genomes]
rs35030260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35072899	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35098436	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35353359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35656932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35744819	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35781323	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35883476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36092177	1.00[EUR][1000 genomes]
rs4947336	0.84[EUR][1000 genomes]
rs55690788	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56075693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56189111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67340775	0.91[EUR][1000 genomes]
rs67381177	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67981811	1.00[EUR][1000 genomes]
rs67998226	0.89[EUR][1000 genomes]
rs72846794	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72854513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs34871267	ZFP57	Cis_chr	lymphoblastoid	RTeQTL
rs34871267	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs34871267	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs34871267	AL022393.7	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28351600-28364600	Weak transcription	Right Atrium	heart
2	chr6:28352200-28365800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:28352600-28364400	Strong transcription	Fetal Thymus	thymus
4	chr6:28352600-28364600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:28352600-28365400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:28352600-28365800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:28353000-28364800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:28354000-28364600	Strong transcription	Fetal Muscle Leg	muscle
9	chr6:28354200-28365600	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr6:28354400-28364800	Strong transcription	Fetal Stomach	stomach
11	chr6:28355800-28364800	Weak transcription	Fetal Intestine Small	intestine
12	chr6:28358600-28365000	Weak transcription	Fetal Heart	heart
13	chr6:28359000-28364600	Weak transcription	NHEK	skin
14	chr6:28359200-28365000	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:28359200-28366000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:28359200-28366200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:28359200-28366600	Weak transcription	Right Ventricle	heart
18	chr6:28359400-28364400	Weak transcription	Pancreas	Pancrea
19	chr6:28359400-28364400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:28359400-28364400	Weak transcription	NHDF-Ad	bronchial
21	chr6:28359400-28364600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr6:28359400-28364800	Weak transcription	Esophagus	oesophagus
23	chr6:28359400-28365800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:28359400-28365800	Weak transcription	Gastric	stomach
25	chr6:28359400-28365800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:28359400-28365800	Weak transcription	Small Intestine	intestine
27	chr6:28359400-28366000	Weak transcription	HSMMtube	muscle
28	chr6:28359400-28366600	Weak transcription	Psoas Muscle	Psoas
29	chr6:28359400-28366800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:28359600-28366800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr6:28359800-28366800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:28359800-28366800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:28360600-28364800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:28360800-28364600	Weak transcription	Spleen	Spleen
35	chr6:28360800-28365200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:28360800-28365800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:28360800-28366000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:28360800-28366600	Weak transcription	Colonic Mucosa	Colon
39	chr6:28361000-28364400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:28361000-28364400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:28361000-28364400	Weak transcription	Brain Anterior Caudate	brain
42	chr6:28361000-28364600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:28361000-28364600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:28361000-28364600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:28361000-28364600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr6:28361000-28364600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr6:28361000-28364600	Weak transcription	HUVEC	blood vessel
48	chr6:28361000-28364800	Weak transcription	Brain Angular Gyrus	brain
49	chr6:28361000-28365600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:28361000-28365600	Weak transcription	Brain Substantia Nigra	brain

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