Variant report

Variant	rs68188794
Chromosome Location	chr6:28080777-28080778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr6:28080670-28080796	K562	blood:	n/a	n/a
2	POLR2A	chr6:28080431-28080796	K562	blood:	n/a	n/a
3	POLR2A	chr6:28077969-28082972	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28078804..28081627-chr6:28178928..28180967,2	K562	blood:
2	chr6:27855775..27858659-chr6:28079519..28081995,2	MCF-7	breast:
3	chr6:28080238..28082315-chr6:28097763..28099279,2	MCF-7	breast:
4	chr6:28078707..28081490-chr6:28095158..28097725,2	K562	blood:
5	chr6:28080501..28082072-chr6:28102597..28105100,2	K562	blood:
6	chr6:27863004..27864854-chr6:28080355..28082489,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000219392	TF binding region
ENSG00000197153	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000269293	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs13195291	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13197176	1.00[AMR][1000 genomes]
rs13197574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13197633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13200214	1.00[AFR][1000 genomes]
rs13201308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13203816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13205911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13207345	1.00[AFR][1000 genomes]
rs13217619	1.00[AFR][1000 genomes]
rs13217984	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34166054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34218844	1.00[AFR][1000 genomes]
rs34243448	1.00[AFR][1000 genomes]
rs34371502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34505829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34588114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34765154	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34832585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35001169	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35016036	1.00[AFR][1000 genomes]
rs35030260	1.00[AFR][1000 genomes]
rs35098436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35345226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35656932	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35749575	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35781323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35902873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56075693	1.00[AFR][1000 genomes]
rs56189111	1.00[AFR][1000 genomes]
rs66886492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67297533	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71537572	1.00[AFR][1000 genomes]
rs71559070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71559072	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72846780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72846794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72854513	1.00[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs68188794	AL022393.7	cis	Muscle Skeletal	GTEx

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28073000-28083800	Weak transcription	Aorta	Aorta
2	chr6:28073200-28081600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:28073200-28081600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:28073200-28082200	Weak transcription	HSMM	muscle
5	chr6:28073200-28082400	Weak transcription	Fetal Stomach	stomach
6	chr6:28073200-28083000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:28073200-28083400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:28073200-28091400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:28073200-28091800	Weak transcription	Right Ventricle	heart
10	chr6:28073400-28081200	Weak transcription	Adipose Nuclei	Adipose
11	chr6:28073400-28081600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:28073400-28081600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:28073400-28081600	Weak transcription	HSMMtube	muscle
14	chr6:28073400-28081600	Weak transcription	NH-A	brain
15	chr6:28073400-28081800	Weak transcription	Primary B cells from cord blood	blood
16	chr6:28073400-28082000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:28073400-28082000	Weak transcription	Fetal Thymus	thymus
18	chr6:28073400-28082200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:28073400-28082200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:28073400-28082200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:28073400-28082200	Weak transcription	GM12878-XiMat	blood
22	chr6:28073400-28082400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:28073400-28082400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:28073400-28082400	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:28073400-28082400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:28073400-28082600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:28073400-28082600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:28073400-28082600	Weak transcription	Placenta	Placenta
29	chr6:28073400-28082800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:28073400-28082800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr6:28073400-28083000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:28073400-28083000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:28073400-28083000	Weak transcription	Fetal Lung	lung
34	chr6:28073400-28083000	Weak transcription	Thymus	Thymus
35	chr6:28073400-28083000	Weak transcription	Spleen	Spleen
36	chr6:28073400-28083200	Weak transcription	Brain Angular Gyrus	brain
37	chr6:28073400-28083400	Weak transcription	A549	lung
38	chr6:28073400-28083600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:28073400-28083600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:28073400-28083600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:28073400-28083600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:28073400-28083600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:28073400-28083600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:28073400-28083600	Weak transcription	Fetal Kidney	kidney
45	chr6:28073400-28083800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:28073400-28083800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:28073400-28088000	Weak transcription	NHLF	lung
48	chr6:28073400-28091200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:28073400-28091400	Weak transcription	NHDF-Ad	bronchial
50	chr6:28073400-28091800	Weak transcription	H9 Cell Line	embryonic stem cell

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