Variant report

Variant	rs34662244
Chromosome Location	chr6:28073881-28073882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28072483..28074243-chr6:28302332..28305412,3	K562	blood:
2	chr6:28072796..28075387-chr6:28095316..28098001,2	K562	blood:
3	chr6:28072485..28074418-chr6:28219456..28221633,2	K562	blood:
4	chr6:27865036..27871044-chr6:28071199..28075672,5	K562	blood:
5	chr6:28054146..28055764-chr6:28072126..28074128,2	K562	blood:
6	chr6:28055848..28058102-chr6:28072977..28074750,2	MCF-7	breast:
7	chr6:28071334..28077239-chr6:28089535..28095129,7	MCF-7	breast:
8	chr6:28071987..28074599-chr6:28081357..28083551,2	MCF-7	breast:
9	chr6:28072063..28073906-chr6:28581888..28585717,3	K562	blood:
10	chr6:28060864..28062442-chr6:28073871..28075470,2	K562	blood:
11	chr6:28072263..28073986-chr6:28075857..28078538,2	MCF-7	breast:
12	chr6:28058540..28063107-chr6:28071049..28073902,4	MCF-7	breast:
13	chr6:28060520..28063673-chr6:28071288..28074730,3	K562	blood:
14	chr6:28047190..28049373-chr6:28071837..28074142,3	MCF-7	breast:
15	chr6:28070830..28074243-chr6:28303566..28305711,3	K562	blood:
16	chr6:27775312..27777594-chr6:28072718..28075698,2	MCF-7	breast:
17	chr6:28047065..28050111-chr6:28070464..28074752,7	MCF-7	breast:
18	chr6:28072503..28074418-chr6:28220133..28221944,2	K562	blood:
19	chr6:28047642..28050085-chr6:28071642..28073977,3	K562	blood:
20	chr6:28072415..28074831-chr6:28247564..28249396,2	MCF-7	breast:
21	chr6:28057457..28060004-chr6:28072522..28074700,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000219392	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000232040	Chromatin interaction
ENSG00000137338	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000219891	Chromatin interaction
ENSG00000196812	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13197574	0.82[EUR][1000 genomes]
rs13201308	0.82[EUR][1000 genomes]
rs13203816	0.82[EUR][1000 genomes]
rs13205911	0.82[EUR][1000 genomes]
rs13217984	0.82[EUR][1000 genomes]
rs34166054	0.82[EUR][1000 genomes]
rs34371502	0.82[EUR][1000 genomes]
rs34505829	0.82[EUR][1000 genomes]
rs34588114	0.82[EUR][1000 genomes]
rs34765154	0.82[EUR][1000 genomes]
rs34832585	0.82[EUR][1000 genomes]
rs35098436	0.82[EUR][1000 genomes]
rs35345226	0.82[EUR][1000 genomes]
rs35749575	0.82[EUR][1000 genomes]
rs35781323	0.82[EUR][1000 genomes]
rs35902873	0.82[EUR][1000 genomes]
rs66886492	0.82[EUR][1000 genomes]
rs67297533	0.85[EUR][1000 genomes]
rs71559070	0.82[EUR][1000 genomes]
rs71559072	0.82[EUR][1000 genomes]
rs72846780	0.82[EUR][1000 genomes]
rs72846794	0.82[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs34662244	AL022393.7	cis	Muscle Skeletal	GTEx
rs34662244	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs34662244	ZFP57	Cis_chr	lymphoblastoid	RTeQTL
rs34662244	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28073000-28083800	Weak transcription	Aorta	Aorta
2	chr6:28073200-28081600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:28073200-28081600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:28073200-28082200	Weak transcription	HSMM	muscle
5	chr6:28073200-28082400	Weak transcription	Fetal Stomach	stomach
6	chr6:28073200-28083000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:28073200-28083400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:28073200-28091400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:28073200-28091800	Weak transcription	Right Ventricle	heart
10	chr6:28073400-28074000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:28073400-28074000	Active TSS	Psoas Muscle	Psoas
12	chr6:28073400-28075200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:28073400-28075200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:28073400-28075200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:28073400-28075400	Weak transcription	Brain Substantia Nigra	brain
16	chr6:28073400-28075400	Weak transcription	Lung	lung
17	chr6:28073400-28075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:28073400-28075600	Weak transcription	Ovary	ovary
19	chr6:28073400-28076000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:28073400-28080200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:28073400-28081200	Weak transcription	Adipose Nuclei	Adipose
22	chr6:28073400-28081600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:28073400-28081600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:28073400-28081600	Weak transcription	HSMMtube	muscle
25	chr6:28073400-28081600	Weak transcription	NH-A	brain
26	chr6:28073400-28081800	Weak transcription	Primary B cells from cord blood	blood
27	chr6:28073400-28082000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:28073400-28082000	Weak transcription	Fetal Thymus	thymus
29	chr6:28073400-28082200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:28073400-28082200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:28073400-28082200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:28073400-28082200	Weak transcription	GM12878-XiMat	blood
33	chr6:28073400-28082400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:28073400-28082400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:28073400-28082400	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:28073400-28082400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:28073400-28082600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:28073400-28082600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:28073400-28082600	Weak transcription	Placenta	Placenta
40	chr6:28073400-28082800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:28073400-28082800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:28073400-28083000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:28073400-28083000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:28073400-28083000	Weak transcription	Fetal Lung	lung
45	chr6:28073400-28083000	Weak transcription	Thymus	Thymus
46	chr6:28073400-28083000	Weak transcription	Spleen	Spleen
47	chr6:28073400-28083200	Weak transcription	Brain Angular Gyrus	brain
48	chr6:28073400-28083400	Weak transcription	A549	lung
49	chr6:28073400-28083600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:28073400-28083600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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