Variant report

Variant	rs34561304
Chromosome Location	chr7:14885667-14885668
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10225316	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1988291	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2041409	0.88[EUR][1000 genomes]
rs2191475	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2358070	0.90[EUR][1000 genomes]
rs4721382	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58021112	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60142008	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60557254	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6461140	0.92[EUR][1000 genomes]
rs7784739	0.91[EUR][1000 genomes]
rs7790062	0.92[EUR][1000 genomes]
rs7793794	0.91[EUR][1000 genomes]
rs929522	0.90[EUR][1000 genomes]
rs929523	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs994369	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14875400-14886200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:14877000-14886000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14885200-14886600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:14885400-14886200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:14885400-14886400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr7:14885400-14886400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:14885400-14886400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:14885400-14886600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:14885600-14886200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr7:14885600-14886400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:14885600-14886400	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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