Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10085416	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10085569	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10225316	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10241696	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10487781	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1988291	0.86[EUR][1000 genomes]
rs2041409	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2109499	0.98[ASN][1000 genomes]
rs2109500	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2191481	0.96[ASN][1000 genomes]
rs2191482	0.84[ASN][1000 genomes]
rs2358070	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34561304	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4721382	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58021112	0.87[EUR][1000 genomes]
rs60142008	0.87[EUR][1000 genomes]
rs6461137	0.97[ASN][1000 genomes]
rs6461140	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7784739	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7790062	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7793794	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7806933	0.97[ASN][1000 genomes]
rs929522	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs929523	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs994369	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14855800-14873200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:14862200-14870200	Weak transcription	Osteobl	bone
3	chr7:14865000-14865800	Enhancers	Left Ventricle	heart
4	chr7:14865200-14865800	Enhancers	Psoas Muscle	Psoas
5	chr7:14865200-14865800	Enhancers	Stomach Mucosa	stomach

Quick Search: