Variant report

Variant	rs7790062
Chromosome Location	chr7:14873320-14873321
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10085416	0.99[ASN][1000 genomes]
rs10085569	0.86[ASN][1000 genomes]
rs10225316	0.92[EUR][1000 genomes]
rs10241696	0.85[ASN][1000 genomes]
rs10487781	0.86[ASN][1000 genomes]
rs1988291	0.91[EUR][1000 genomes]
rs2041409	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2109499	0.98[ASN][1000 genomes]
rs2109500	0.98[ASN][1000 genomes]
rs2191481	0.96[ASN][1000 genomes]
rs2191482	0.84[ASN][1000 genomes]
rs2358070	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34561304	0.92[EUR][1000 genomes]
rs4721382	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58021112	0.88[EUR][1000 genomes]
rs60142008	0.91[EUR][1000 genomes]
rs60557254	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6461137	0.97[ASN][1000 genomes]
rs6461140	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7784739	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7793794	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806933	0.97[ASN][1000 genomes]
rs929522	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs929523	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs994369	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14872400-14876000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:14872400-14876000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:14872400-14877000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:14872400-14877600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:14872800-14874000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:14872800-14875800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:14872800-14877000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:14873000-14873400	Enhancers	Osteobl	bone
9	chr7:14873000-14874800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:14873200-14873400	Enhancers	NHLF	lung
11	chr7:14873200-14873600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr7:14873200-14873600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:14873200-14873800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:14873200-14874000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:14873200-14874000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr7:14873200-14874000	Enhancers	Fetal Heart	heart
17	chr7:14873200-14874000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr7:14873200-14874400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:14873200-14875400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:14873200-14875800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr7:14873200-14876200	Enhancers	Brain Germinal Matrix	brain
22	chr7:14873200-14876600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr7:14873200-14876600	Enhancers	NHDF-Ad	bronchial
24	chr7:14873200-14877600	Enhancers	Placenta Amnion	Placenta Amnion

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