Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10225316	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1988291	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2041409	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs2191475	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2358070	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs34561304	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4721382	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58021112	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60142008	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60557254	0.85[EUR][1000 genomes]
rs6461140	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs6963154	0.90[ASN][1000 genomes]
rs6966249	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7784739	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs7788694	0.90[ASN][1000 genomes]
rs7788826	0.88[ASN][1000 genomes]
rs7790062	0.86[EUR][1000 genomes]
rs7793794	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs929522	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs929523	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs994368	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887713	chr7:14888418-14939924	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv887714	chr7:14888418-14941576	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2758104	chr7:14896877-15299786	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2759512	chr7:14896877-15299786	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14888400-14898600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:14897800-14898400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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