The 2.0 version of rSNPBase

Variant report

Variant rs34570404
Chromosome Location chr19:53172503-53172504
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53153600-53184200 Weak transcription Colonic Mucosa Colon
2 chr19:53155000-53191400 Weak transcription Colon Smooth Muscle Colon
3 chr19:53157000-53176600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr19:53157200-53191600 Weak transcription Rectal Smooth Muscle rectum
5 chr19:53158600-53177200 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr19:53162600-53173200 Weak transcription Esophagus oesophagus
7 chr19:53162600-53182600 Weak transcription Fetal Muscle Trunk muscle
8 chr19:53162800-53174600 Strong transcription Primary hematopoietic stem cells short term culture blood
9 chr19:53162800-53186600 Weak transcription Aorta Aorta
10 chr19:53163000-53182600 Weak transcription Hela-S3 cervix
11 chr19:53163000-53192400 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr19:53163200-53183000 Weak transcription Primary B cells from peripheral blood blood
13 chr19:53163800-53177200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr19:53163800-53183200 Weak transcription HUVEC blood vessel
15 chr19:53163800-53188400 Weak transcription Ovary ovary
16 chr19:53164000-53174400 Weak transcription GM12878-XiMat blood
17 chr19:53164000-53178600 Weak transcription Brain Germinal Matrix brain
18 chr19:53164000-53183000 Weak transcription Adipose Nuclei Adipose
19 chr19:53164000-53185600 Weak transcription Muscle Satellite Cultured Cells --
20 chr19:53164000-53192400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr19:53164000-53192400 Weak transcription NH-A brain
22 chr19:53164000-53193000 Weak transcription Right Ventricle heart
23 chr19:53164200-53177200 Weak transcription Primary T helper cells PMA-I stimulated --
24 chr19:53164200-53177200 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr19:53164200-53192400 Weak transcription Brain Angular Gyrus brain
26 chr19:53164400-53176400 Weak transcription Fetal Lung lung
27 chr19:53164400-53192400 Weak transcription HSMM muscle
28 chr19:53164600-53189200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr19:53164600-53192200 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr19:53164800-53172800 Weak transcription Fetal Intestine Small intestine
31 chr19:53164800-53186400 Weak transcription Osteobl bone
32 chr19:53165000-53177400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr19:53165000-53179000 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr19:53165000-53191600 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr19:53165000-53191800 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr19:53165000-53192400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr19:53165200-53172800 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr19:53165200-53177200 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr19:53165200-53186400 Weak transcription Fetal Thymus thymus
40 chr19:53165200-53186400 Weak transcription NHLF lung
41 chr19:53165400-53183000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr19:53165600-53179000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr19:53165600-53191800 Weak transcription NHDF-Ad bronchial
44 chr19:53165800-53179000 Weak transcription Primary hematopoietic stem cells blood
45 chr19:53165800-53186400 Weak transcription Pancreas Pancrea
46 chr19:53165800-53191600 Weak transcription Fetal Brain Female brain
47 chr19:53166200-53182400 Weak transcription Stomach Smooth Muscle stomach
48 chr19:53166400-53176400 Weak transcription Primary T cells fromperipheralblood blood
49 chr19:53166400-53177400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
50 chr19:53166400-53178600 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015