Variant report
Variant | rs34602534 |
---|---|
Chromosome Location | chr14:35107957-35107958 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:35107496..35110407-chr14:35118041..35119624,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11156849 | 0.88[EUR][1000 genomes] |
rs12050290 | 0.95[CEU][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap] |
rs12435717 | 0.80[ASW][hapmap];1.00[CEU][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes] |
rs12586808 | 0.87[AFR][1000 genomes];0.88[EUR][1000 genomes] |
rs12589576 | 0.95[CEU][hapmap];0.80[TSI][hapmap] |
rs12590540 | 0.80[AFR][1000 genomes];0.88[EUR][1000 genomes] |
rs12878227 | 0.86[EUR][1000 genomes] |
rs12884427 | 0.86[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs12884997 | 0.87[EUR][1000 genomes] |
rs12885352 | 0.87[EUR][1000 genomes] |
rs12890311 | 0.85[AFR][1000 genomes];0.91[EUR][1000 genomes] |
rs12894795 | 0.95[CEU][hapmap];0.91[YRI][hapmap] |
rs12895640 | 1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.91[EUR][1000 genomes] |
rs13826 | 0.80[ASW][hapmap];1.00[CEU][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.85[EUR][1000 genomes] |
rs17102628 | 0.82[CHD][hapmap] |
rs17524152 | 0.80[ASW][hapmap];1.00[CEU][hapmap];0.81[LWK][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes] |
rs28515732 | 0.86[EUR][1000 genomes] |
rs34068551 | 0.87[EUR][1000 genomes] |
rs34479175 | 0.87[EUR][1000 genomes] |
rs34814201 | 0.94[EUR][1000 genomes] |
rs34978749 | 0.92[EUR][1000 genomes] |
rs35194168 | 0.86[EUR][1000 genomes] |
rs35257621 | 0.86[EUR][1000 genomes] |
rs35415402 | 0.87[EUR][1000 genomes] |
rs4368076 | 0.95[CEU][hapmap];0.85[TSI][hapmap];0.84[YRI][hapmap] |
rs4628872 | 0.87[EUR][1000 genomes] |
rs56406864 | 0.96[ASN][1000 genomes] |
rs58688462 | 0.86[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs60412145 | 0.90[EUR][1000 genomes] |
rs61316540 | 0.87[EUR][1000 genomes] |
rs61979715 | 0.87[EUR][1000 genomes] |
rs61979723 | 0.93[EUR][1000 genomes] |
rs6650487 | 1.00[CEU][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes] |
rs6650497 | 0.91[EUR][1000 genomes] |
rs67170227 | 0.88[AFR][1000 genomes];0.91[EUR][1000 genomes] |
rs7146042 | 1.00[CEU][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes] |
rs73236276 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040980 | chr14:34345018-35255592 | Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 109 gene(s) | inside rSNPs | diseases |
2 | nsv1048408 | chr14:34958352-35255592 | Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
3 | esv3392700 | chr14:34989406-35365530 | Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 85 gene(s) | inside rSNPs | diseases |
4 | nsv1038360 | chr14:35040853-35152886 | Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
5 | esv3408652 | chr14:35069966-35110821 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
6 | nsv523334 | chr14:35075022-35131862 | Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
7 | nsv1041857 | chr14:35084889-35417180 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
8 | nsv1237 | chr14:35101202-35129546 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
9 | nsv901601 | chr14:35101785-35131862 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
10 | nsv564195 | chr14:35107957-35153991 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:35104400-35108600 | Weak transcription | Hela-S3 | cervix |