Variant report

Variant	rs28515732
Chromosome Location	chr14:35033292-35033293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35008837..35010940-chr14:35031466..35034355,2	MCF-7	breast:
2	chr14:35031288..35033834-chr14:35035725..35037363,2	K562	blood:
3	chr14:35023547..35025305-chr14:35032429..35034005,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129518	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11156849	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12050290	0.82[EUR][1000 genomes]
rs12435717	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12586808	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12588878	0.81[AMR][1000 genomes]
rs12590540	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12878227	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12878854	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12882703	0.81[EUR][1000 genomes]
rs12884427	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12884997	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12885352	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12890311	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12895640	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13826	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17524152	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34068551	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34356189	0.86[EUR][1000 genomes]
rs34437689	0.86[EUR][1000 genomes]
rs34479175	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34602534	0.86[EUR][1000 genomes]
rs34814201	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34978749	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35091031	0.82[EUR][1000 genomes]
rs35194168	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35257621	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35415402	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4368076	0.84[EUR][1000 genomes]
rs4628872	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58688462	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60412145	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61316540	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61979674	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61979715	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61979723	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6650487	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6650497	0.90[EUR][1000 genomes]
rs67170227	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71419996	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7146042	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73236276	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1049048	chr14:34969406-35048672	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35017400-35036000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:35023600-35035400	Weak transcription	Aorta	Aorta
3	chr14:35024000-35035400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:35024000-35036000	Weak transcription	Esophagus	oesophagus
5	chr14:35024000-35036200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:35024000-35040600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:35024200-35035200	Weak transcription	Primary T cells from cord blood	blood
8	chr14:35024200-35035200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr14:35024200-35036000	Weak transcription	Right Ventricle	heart
10	chr14:35024200-35036400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:35024200-35039000	Weak transcription	Brain Angular Gyrus	brain
12	chr14:35024200-35041800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr14:35024200-35046200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr14:35024400-35033600	Weak transcription	Fetal Lung	lung
15	chr14:35024400-35034200	Weak transcription	NHLF	lung
16	chr14:35024400-35034600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr14:35024400-35035800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:35024400-35035800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr14:35024400-35035800	Weak transcription	Fetal Kidney	kidney
20	chr14:35024400-35036000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:35024400-35036000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:35024400-35036200	Weak transcription	Pancreas	Pancrea
23	chr14:35024400-35037800	Weak transcription	Primary B cells from cord blood	blood
24	chr14:35024400-35038000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:35024400-35038200	Weak transcription	Brain Anterior Caudate	brain
26	chr14:35024400-35040600	Weak transcription	K562	blood
27	chr14:35024400-35053600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr14:35024400-35056800	Weak transcription	Small Intestine	intestine
29	chr14:35024400-35060600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:35024400-35066200	Weak transcription	Stomach Mucosa	stomach
31	chr14:35024600-35036600	Weak transcription	Hela-S3	cervix
32	chr14:35028800-35035400	Weak transcription	Fetal Brain Female	brain
33	chr14:35029200-35035400	Weak transcription	HSMMtube	muscle
34	chr14:35030000-35034600	Weak transcription	Fetal Brain Male	brain
35	chr14:35030600-35036000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr14:35031400-35033800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:35031400-35042800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:35031400-35047400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:35031400-35052600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr14:35031400-35073400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr14:35031400-35073400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr14:35031400-35078000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr14:35031600-35033800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:35031600-35033800	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:35031600-35034400	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr14:35031600-35036800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr14:35031600-35037600	Strong transcription	Adipose Nuclei	Adipose
48	chr14:35031600-35038000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:35031600-35039000	Strong transcription	Duodenum Mucosa	Duodenum
50	chr14:35031600-35039200	Strong transcription	Brain Hippocampus Middle	brain

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